Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS21425

Experiment: R2A with Paraquat dichloride 0.064 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS21420 and RR42_RS21425 are separated by 149 nucleotidesRR42_RS21425 and RR42_RS21430 are separated by 12 nucleotides RR42_RS21420: RR42_RS21420 - acyl-CoA dehydrogenase, at 134,799 to 135,956 _RS21420 RR42_RS21425: RR42_RS21425 - hypothetical protein, at 136,106 to 136,963 _RS21425 RR42_RS21430: RR42_RS21430 - alpha-ketoglutarate permease, at 136,976 to 138,286 _RS21430 Position (kb) 136 137Strain fitness (log2 ratio) -2 -1 0 1 2at 135.123 kb on + strand, within RR42_RS21420at 135.123 kb on + strand, within RR42_RS21420at 135.237 kb on + strand, within RR42_RS21420at 135.237 kb on + strand, within RR42_RS21420at 135.238 kb on - strand, within RR42_RS21420at 135.238 kb on - strand, within RR42_RS21420at 135.293 kb on + strand, within RR42_RS21420at 135.530 kb on + strand, within RR42_RS21420at 135.531 kb on - strand, within RR42_RS21420at 135.570 kb on - strand, within RR42_RS21420at 135.585 kb on + strand, within RR42_RS21420at 135.586 kb on - strand, within RR42_RS21420at 135.586 kb on - strand, within RR42_RS21420at 135.656 kb on + strand, within RR42_RS21420at 135.672 kb on + strand, within RR42_RS21420at 135.840 kb on + strand, within RR42_RS21420at 135.840 kb on + strand, within RR42_RS21420at 135.841 kb on - strandat 135.842 kb on + strandat 135.842 kb on + strandat 135.843 kb on - strandat 135.853 kb on - strandat 135.881 kb on - strandat 135.881 kb on - strandat 135.898 kb on - strandat 136.020 kb on + strandat 136.139 kb on + strandat 136.289 kb on + strand, within RR42_RS21425at 136.289 kb on + strand, within RR42_RS21425at 136.290 kb on - strand, within RR42_RS21425at 136.404 kb on - strand, within RR42_RS21425at 136.436 kb on + strand, within RR42_RS21425at 136.481 kb on + strand, within RR42_RS21425at 136.481 kb on + strand, within RR42_RS21425at 136.481 kb on + strand, within RR42_RS21425at 136.481 kb on + strand, within RR42_RS21425at 136.523 kb on + strand, within RR42_RS21425at 136.523 kb on + strand, within RR42_RS21425at 136.589 kb on + strand, within RR42_RS21425at 136.590 kb on - strand, within RR42_RS21425at 136.590 kb on - strand, within RR42_RS21425at 136.590 kb on - strand, within RR42_RS21425at 136.730 kb on + strand, within RR42_RS21425at 136.730 kb on + strand, within RR42_RS21425at 136.731 kb on - strand, within RR42_RS21425at 136.731 kb on - strand, within RR42_RS21425at 136.732 kb on + strand, within RR42_RS21425at 136.732 kb on + strand, within RR42_RS21425at 136.733 kb on - strand, within RR42_RS21425at 136.995 kb on + strandat 136.996 kb on - strandat 137.059 kb on - strandat 137.064 kb on + strandat 137.065 kb on - strandat 137.065 kb on - strandat 137.065 kb on - strandat 137.065 kb on - strandat 137.110 kb on - strand, within RR42_RS21430at 137.148 kb on + strand, within RR42_RS21430at 137.148 kb on + strand, within RR42_RS21430at 137.148 kb on + strand, within RR42_RS21430at 137.149 kb on - strand, within RR42_RS21430at 137.223 kb on + strand, within RR42_RS21430at 137.224 kb on - strand, within RR42_RS21430at 137.224 kb on - strand, within RR42_RS21430at 137.347 kb on + strand, within RR42_RS21430at 137.347 kb on + strand, within RR42_RS21430at 137.348 kb on - strand, within RR42_RS21430at 137.348 kb on - strand, within RR42_RS21430at 137.348 kb on - strand, within RR42_RS21430at 137.406 kb on + strand, within RR42_RS21430at 137.406 kb on + strand, within RR42_RS21430at 137.406 kb on + strand, within RR42_RS21430at 137.406 kb on + strand, within RR42_RS21430at 137.407 kb on - strand, within RR42_RS21430at 137.407 kb on - strand, within RR42_RS21430at 137.407 kb on - strand, within RR42_RS21430at 137.407 kb on - strand, within RR42_RS21430at 137.407 kb on - strand, within RR42_RS21430at 137.407 kb on - strand, within RR42_RS21430at 137.407 kb on - strand, within RR42_RS21430at 137.433 kb on + strand, within RR42_RS21430at 137.433 kb on + strand, within RR42_RS21430at 137.433 kb on + strand, within RR42_RS21430at 137.434 kb on - strand, within RR42_RS21430at 137.434 kb on - strand, within RR42_RS21430at 137.485 kb on + strand, within RR42_RS21430at 137.485 kb on + strand, within RR42_RS21430at 137.486 kb on - strand, within RR42_RS21430at 137.486 kb on - strand, within RR42_RS21430at 137.487 kb on + strand, within RR42_RS21430at 137.487 kb on + strand, within RR42_RS21430at 137.487 kb on + strand, within RR42_RS21430at 137.487 kb on + strand, within RR42_RS21430at 137.487 kb on + strand, within RR42_RS21430at 137.487 kb on + strand, within RR42_RS21430at 137.487 kb on + strand, within RR42_RS21430at 137.487 kb on + strand, within RR42_RS21430at 137.488 kb on - strand, within RR42_RS21430at 137.488 kb on - strand, within RR42_RS21430at 137.488 kb on - strand, within RR42_RS21430at 137.488 kb on - strand, within RR42_RS21430at 137.488 kb on - strand, within RR42_RS21430at 137.500 kb on + strand, within RR42_RS21430at 137.502 kb on + strand, within RR42_RS21430at 137.503 kb on - strand, within RR42_RS21430at 137.503 kb on - strand, within RR42_RS21430at 137.527 kb on + strand, within RR42_RS21430at 137.527 kb on + strand, within RR42_RS21430at 137.530 kb on - strand, within RR42_RS21430at 137.557 kb on + strand, within RR42_RS21430at 137.557 kb on + strand, within RR42_RS21430at 137.557 kb on + strand, within RR42_RS21430at 137.558 kb on - strand, within RR42_RS21430at 137.558 kb on - strand, within RR42_RS21430at 137.839 kb on + strand, within RR42_RS21430at 137.839 kb on + strand, within RR42_RS21430at 137.839 kb on + strand, within RR42_RS21430at 137.839 kb on + strand, within RR42_RS21430at 137.839 kb on + strand, within RR42_RS21430at 137.839 kb on + strand, within RR42_RS21430at 137.840 kb on - strand, within RR42_RS21430at 137.840 kb on - strand, within RR42_RS21430at 137.840 kb on - strand, within RR42_RS21430at 137.840 kb on - strand, within RR42_RS21430at 137.841 kb on + strand, within RR42_RS21430at 137.841 kb on + strand, within RR42_RS21430at 137.841 kb on + strand, within RR42_RS21430at 137.841 kb on + strand, within RR42_RS21430at 137.841 kb on + strand, within RR42_RS21430at 137.841 kb on + strand, within RR42_RS21430at 137.842 kb on - strand, within RR42_RS21430at 137.842 kb on - strand, within RR42_RS21430at 137.842 kb on - strand, within RR42_RS21430at 137.842 kb on - strand, within RR42_RS21430at 137.842 kb on - strand, within RR42_RS21430at 137.860 kb on - strand, within RR42_RS21430at 137.937 kb on + strand, within RR42_RS21430at 137.937 kb on + strand, within RR42_RS21430at 137.938 kb on - strand, within RR42_RS21430at 137.938 kb on - strand, within RR42_RS21430

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Paraquat dichloride 0.064 mg/ml
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135,123 + RR42_RS21420 0.28 +0.3
135,123 + RR42_RS21420 0.28 +0.8
135,237 + RR42_RS21420 0.38 -1.0
135,237 + RR42_RS21420 0.38 +0.1
135,238 - RR42_RS21420 0.38 +1.3
135,238 - RR42_RS21420 0.38 -0.6
135,293 + RR42_RS21420 0.43 -0.8
135,530 + RR42_RS21420 0.63 +0.5
135,531 - RR42_RS21420 0.63 +0.0
135,570 - RR42_RS21420 0.67 +0.8
135,585 + RR42_RS21420 0.68 +0.3
135,586 - RR42_RS21420 0.68 +0.8
135,586 - RR42_RS21420 0.68 +0.1
135,656 + RR42_RS21420 0.74 -1.5
135,672 + RR42_RS21420 0.75 -0.1
135,840 + RR42_RS21420 0.90 +0.5
135,840 + RR42_RS21420 0.90 -0.4
135,841 - +0.6
135,842 + -0.5
135,842 + -0.8
135,843 - -0.9
135,853 - -0.6
135,881 - -0.2
135,881 - +0.3
135,898 - +1.2
136,020 + -0.3
136,139 + -0.1
136,289 + RR42_RS21425 0.21 +1.1
136,289 + RR42_RS21425 0.21 -1.3
136,290 - RR42_RS21425 0.21 +0.2
136,404 - RR42_RS21425 0.35 -0.4
136,436 + RR42_RS21425 0.38 +0.6
136,481 + RR42_RS21425 0.44 +0.6
136,481 + RR42_RS21425 0.44 -1.3
136,481 + RR42_RS21425 0.44 +1.0
136,481 + RR42_RS21425 0.44 +0.7
136,523 + RR42_RS21425 0.49 +0.4
136,523 + RR42_RS21425 0.49 -0.9
136,589 + RR42_RS21425 0.56 +0.8
136,590 - RR42_RS21425 0.56 +1.8
136,590 - RR42_RS21425 0.56 +1.3
136,590 - RR42_RS21425 0.56 -0.5
136,730 + RR42_RS21425 0.73 -0.3
136,730 + RR42_RS21425 0.73 -0.3
136,731 - RR42_RS21425 0.73 -0.7
136,731 - RR42_RS21425 0.73 +1.0
136,732 + RR42_RS21425 0.73 -0.7
136,732 + RR42_RS21425 0.73 -1.2
136,733 - RR42_RS21425 0.73 -1.1
136,995 + +0.2
136,996 - +0.8
137,059 - -0.7
137,064 + -0.2
137,065 - +0.6
137,065 - +0.5
137,065 - +0.5
137,065 - -1.0
137,110 - RR42_RS21430 0.10 -0.5
137,148 + RR42_RS21430 0.13 +0.8
137,148 + RR42_RS21430 0.13 -1.6
137,148 + RR42_RS21430 0.13 +1.1
137,149 - RR42_RS21430 0.13 +0.4
137,223 + RR42_RS21430 0.19 -0.4
137,224 - RR42_RS21430 0.19 -0.4
137,224 - RR42_RS21430 0.19 +0.8
137,347 + RR42_RS21430 0.28 -1.5
137,347 + RR42_RS21430 0.28 +1.5
137,348 - RR42_RS21430 0.28 -0.2
137,348 - RR42_RS21430 0.28 -0.3
137,348 - RR42_RS21430 0.28 +0.4
137,406 + RR42_RS21430 0.33 -0.1
137,406 + RR42_RS21430 0.33 +0.6
137,406 + RR42_RS21430 0.33 +0.8
137,406 + RR42_RS21430 0.33 -0.1
137,407 - RR42_RS21430 0.33 +1.2
137,407 - RR42_RS21430 0.33 -0.4
137,407 - RR42_RS21430 0.33 -0.9
137,407 - RR42_RS21430 0.33 -2.1
137,407 - RR42_RS21430 0.33 -0.6
137,407 - RR42_RS21430 0.33 -0.8
137,407 - RR42_RS21430 0.33 +0.1
137,433 + RR42_RS21430 0.35 +0.0
137,433 + RR42_RS21430 0.35 -0.0
137,433 + RR42_RS21430 0.35 -0.0
137,434 - RR42_RS21430 0.35 -1.1
137,434 - RR42_RS21430 0.35 +0.9
137,485 + RR42_RS21430 0.39 +0.2
137,485 + RR42_RS21430 0.39 -0.3
137,486 - RR42_RS21430 0.39 +0.6
137,486 - RR42_RS21430 0.39 -1.3
137,487 + RR42_RS21430 0.39 -0.2
137,487 + RR42_RS21430 0.39 -0.3
137,487 + RR42_RS21430 0.39 -0.4
137,487 + RR42_RS21430 0.39 -0.6
137,487 + RR42_RS21430 0.39 +0.1
137,487 + RR42_RS21430 0.39 -0.5
137,487 + RR42_RS21430 0.39 -0.2
137,487 + RR42_RS21430 0.39 +0.1
137,488 - RR42_RS21430 0.39 -0.1
137,488 - RR42_RS21430 0.39 +1.0
137,488 - RR42_RS21430 0.39 -0.9
137,488 - RR42_RS21430 0.39 +1.0
137,488 - RR42_RS21430 0.39 -0.4
137,500 + RR42_RS21430 0.40 -0.3
137,502 + RR42_RS21430 0.40 +0.3
137,503 - RR42_RS21430 0.40 +0.6
137,503 - RR42_RS21430 0.40 +1.3
137,527 + RR42_RS21430 0.42 -0.1
137,527 + RR42_RS21430 0.42 -0.1
137,530 - RR42_RS21430 0.42 +0.7
137,557 + RR42_RS21430 0.44 +0.6
137,557 + RR42_RS21430 0.44 -0.6
137,557 + RR42_RS21430 0.44 -1.0
137,558 - RR42_RS21430 0.44 -2.2
137,558 - RR42_RS21430 0.44 +0.7
137,839 + RR42_RS21430 0.66 -0.2
137,839 + RR42_RS21430 0.66 -0.1
137,839 + RR42_RS21430 0.66 -1.7
137,839 + RR42_RS21430 0.66 +2.6
137,839 + RR42_RS21430 0.66 -0.7
137,839 + RR42_RS21430 0.66 -1.6
137,840 - RR42_RS21430 0.66 -0.7
137,840 - RR42_RS21430 0.66 -1.6
137,840 - RR42_RS21430 0.66 +0.9
137,840 - RR42_RS21430 0.66 -0.7
137,841 + RR42_RS21430 0.66 -0.3
137,841 + RR42_RS21430 0.66 +1.0
137,841 + RR42_RS21430 0.66 -0.7
137,841 + RR42_RS21430 0.66 +0.4
137,841 + RR42_RS21430 0.66 +1.0
137,841 + RR42_RS21430 0.66 +0.2
137,842 - RR42_RS21430 0.66 -0.0
137,842 - RR42_RS21430 0.66 -0.1
137,842 - RR42_RS21430 0.66 +0.3
137,842 - RR42_RS21430 0.66 +0.4
137,842 - RR42_RS21430 0.66 -0.7
137,860 - RR42_RS21430 0.67 +0.3
137,937 + RR42_RS21430 0.73 -0.7
137,937 + RR42_RS21430 0.73 +0.7
137,938 - RR42_RS21430 0.73 +0.1
137,938 - RR42_RS21430 0.73 -1.1

Or see this region's nucleotide sequence