Experiment: R2A with Paraquat dichloride 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS21000 and RR42_RS21005 are separated by 1 nucleotides RR42_RS21005 and RR42_RS21010 are separated by 46 nucleotides
RR42_RS21000: RR42_RS21000 - glycosyl transferase, at 39,721 to 40,803
_RS21000
RR42_RS21005: RR42_RS21005 - GDP-L-fucose synthase, at 40,805 to 41,797
_RS21005
RR42_RS21010: RR42_RS21010 - GDP-mannose 4,6-dehydratase, at 41,844 to 42,956
_RS21010
Position (kb) 40
41
42 Strain fitness (log2 ratio) -1
0
1
2
3 at 39.972 kb on - strand, within RR42_RS21000 at 40.047 kb on - strand, within RR42_RS21000 at 41.097 kb on + strand, within RR42_RS21005 at 41.274 kb on + strand, within RR42_RS21005 at 41.274 kb on + strand, within RR42_RS21005 at 41.343 kb on + strand, within RR42_RS21005 at 41.386 kb on - strand, within RR42_RS21005 at 41.477 kb on + strand, within RR42_RS21005 at 41.478 kb on - strand, within RR42_RS21005 at 41.613 kb on + strand, within RR42_RS21005 at 41.613 kb on + strand, within RR42_RS21005 at 41.614 kb on - strand, within RR42_RS21005 at 42.226 kb on + strand, within RR42_RS21010 at 42.227 kb on - strand, within RR42_RS21010 at 42.227 kb on - strand, within RR42_RS21010 at 42.322 kb on + strand, within RR42_RS21010 at 42.322 kb on + strand, within RR42_RS21010 at 42.439 kb on + strand, within RR42_RS21010 at 42.439 kb on + strand, within RR42_RS21010 at 42.439 kb on + strand, within RR42_RS21010 at 42.439 kb on + strand, within RR42_RS21010 at 42.440 kb on - strand, within RR42_RS21010 at 42.440 kb on - strand, within RR42_RS21010 at 42.460 kb on + strand, within RR42_RS21010 at 42.485 kb on - strand, within RR42_RS21010 at 42.502 kb on + strand, within RR42_RS21010 at 42.502 kb on + strand at 42.509 kb on + strand, within RR42_RS21010 at 42.586 kb on + strand, within RR42_RS21010 at 42.586 kb on + strand, within RR42_RS21010 at 42.670 kb on + strand, within RR42_RS21010 at 42.671 kb on - strand, within RR42_RS21010
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Paraquat dichloride 0.064 mg/ml remove 39,972 - RR42_RS21000 0.23 +0.3 40,047 - RR42_RS21000 0.30 -0.3 41,097 + RR42_RS21005 0.29 +1.3 41,274 + RR42_RS21005 0.47 +1.3 41,274 + RR42_RS21005 0.47 +2.2 41,343 + RR42_RS21005 0.54 -1.1 41,386 - RR42_RS21005 0.59 -0.6 41,477 + RR42_RS21005 0.68 +0.8 41,478 - RR42_RS21005 0.68 -1.2 41,613 + RR42_RS21005 0.81 -0.1 41,613 + RR42_RS21005 0.81 +0.4 41,614 - RR42_RS21005 0.81 +0.3 42,226 + RR42_RS21010 0.34 +1.6 42,227 - RR42_RS21010 0.34 -0.6 42,227 - RR42_RS21010 0.34 +0.5 42,322 + RR42_RS21010 0.43 +1.2 42,322 + RR42_RS21010 0.43 +0.0 42,439 + RR42_RS21010 0.53 +2.9 42,439 + RR42_RS21010 0.53 -0.8 42,439 + RR42_RS21010 0.53 -0.3 42,439 + RR42_RS21010 0.53 +1.1 42,440 - RR42_RS21010 0.54 +0.2 42,440 - RR42_RS21010 0.54 +0.9 42,460 + RR42_RS21010 0.55 +0.1 42,485 - RR42_RS21010 0.58 -0.6 42,502 + RR42_RS21010 0.59 +1.4 42,502 + +2.6 42,509 + RR42_RS21010 0.60 +0.4 42,586 + RR42_RS21010 0.67 -0.1 42,586 + RR42_RS21010 0.67 +2.6 42,670 + RR42_RS21010 0.74 -0.1 42,671 - RR42_RS21010 0.74 -0.2
Or see this region's nucleotide sequence