Experiment: R2A with Paraquat dichloride 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS20365 and RR42_RS20370 are separated by 156 nucleotides RR42_RS20370 and RR42_RS20375 are separated by 144 nucleotides RR42_RS20375 and RR42_RS20380 are separated by 25 nucleotides
RR42_RS20365: RR42_RS20365 - phenylalanine 4-monooxygenase (EC 1.14.16.1) <small>(from data)</small>, at 4,410,715 to 4,411,647
_RS20365
RR42_RS20370: RR42_RS20370 - pterin-4-alpha-carbinolamine dehydratase, at 4,411,804 to 4,412,121
_RS20370
RR42_RS20375: RR42_RS20375 - transcriptional regulator, at 4,412,266 to 4,412,970
_RS20375
RR42_RS20380: RR42_RS20380 - histidine kinase, at 4,412,996 to 4,414,615
_RS20380
Position (kb) 4411
4412
4413 Strain fitness (log2 ratio) -1
0
1
2 at 4410.860 kb on - strand, within RR42_RS20365 at 4410.862 kb on - strand, within RR42_RS20365 at 4410.862 kb on - strand, within RR42_RS20365 at 4410.895 kb on + strand, within RR42_RS20365 at 4410.896 kb on - strand, within RR42_RS20365 at 4410.896 kb on - strand, within RR42_RS20365 at 4411.216 kb on + strand, within RR42_RS20365 at 4411.216 kb on + strand, within RR42_RS20365 at 4411.216 kb on + strand, within RR42_RS20365 at 4411.216 kb on + strand, within RR42_RS20365 at 4411.217 kb on - strand, within RR42_RS20365 at 4411.217 kb on - strand, within RR42_RS20365 at 4411.217 kb on - strand, within RR42_RS20365 at 4411.217 kb on - strand, within RR42_RS20365 at 4411.217 kb on - strand, within RR42_RS20365 at 4411.294 kb on + strand, within RR42_RS20365 at 4411.295 kb on - strand, within RR42_RS20365 at 4411.342 kb on + strand, within RR42_RS20365 at 4411.381 kb on + strand, within RR42_RS20365 at 4411.382 kb on - strand, within RR42_RS20365 at 4411.474 kb on + strand, within RR42_RS20365 at 4411.474 kb on + strand, within RR42_RS20365 at 4411.474 kb on + strand, within RR42_RS20365 at 4411.474 kb on + strand, within RR42_RS20365 at 4411.475 kb on - strand, within RR42_RS20365 at 4411.537 kb on + strand, within RR42_RS20365 at 4411.537 kb on + strand, within RR42_RS20365 at 4411.537 kb on + strand, within RR42_RS20365 at 4411.538 kb on - strand, within RR42_RS20365 at 4411.829 kb on + strand at 4411.915 kb on - strand, within RR42_RS20370 at 4412.008 kb on + strand, within RR42_RS20370 at 4412.159 kb on - strand at 4412.194 kb on + strand at 4412.271 kb on + strand at 4412.271 kb on + strand at 4412.557 kb on + strand, within RR42_RS20375 at 4412.558 kb on - strand, within RR42_RS20375 at 4412.606 kb on + strand, within RR42_RS20375 at 4412.607 kb on - strand, within RR42_RS20375 at 4412.872 kb on + strand, within RR42_RS20375 at 4412.872 kb on + strand, within RR42_RS20375 at 4412.872 kb on + strand, within RR42_RS20375 at 4412.872 kb on + strand, within RR42_RS20375 at 4412.941 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Paraquat dichloride 0.064 mg/ml remove 4,410,860 - RR42_RS20365 0.16 +0.7 4,410,862 - RR42_RS20365 0.16 +0.4 4,410,862 - RR42_RS20365 0.16 +1.1 4,410,895 + RR42_RS20365 0.19 +1.2 4,410,896 - RR42_RS20365 0.19 +1.0 4,410,896 - RR42_RS20365 0.19 -0.3 4,411,216 + RR42_RS20365 0.54 -0.8 4,411,216 + RR42_RS20365 0.54 +1.1 4,411,216 + RR42_RS20365 0.54 -0.6 4,411,216 + RR42_RS20365 0.54 +0.7 4,411,217 - RR42_RS20365 0.54 +1.7 4,411,217 - RR42_RS20365 0.54 +2.0 4,411,217 - RR42_RS20365 0.54 +0.5 4,411,217 - RR42_RS20365 0.54 +1.5 4,411,217 - RR42_RS20365 0.54 -0.8 4,411,294 + RR42_RS20365 0.62 -0.1 4,411,295 - RR42_RS20365 0.62 -1.3 4,411,342 + RR42_RS20365 0.67 +0.8 4,411,381 + RR42_RS20365 0.71 +0.1 4,411,382 - RR42_RS20365 0.71 -0.6 4,411,474 + RR42_RS20365 0.81 +0.1 4,411,474 + RR42_RS20365 0.81 -0.3 4,411,474 + RR42_RS20365 0.81 +0.7 4,411,474 + RR42_RS20365 0.81 +0.5 4,411,475 - RR42_RS20365 0.81 +1.2 4,411,537 + RR42_RS20365 0.88 +0.2 4,411,537 + RR42_RS20365 0.88 +0.2 4,411,537 + RR42_RS20365 0.88 -1.5 4,411,538 - RR42_RS20365 0.88 +0.8 4,411,829 + +0.4 4,411,915 - RR42_RS20370 0.35 -0.8 4,412,008 + RR42_RS20370 0.64 +0.4 4,412,159 - -0.3 4,412,194 + +0.4 4,412,271 + +1.8 4,412,271 + -1.4 4,412,557 + RR42_RS20375 0.41 -1.7 4,412,558 - RR42_RS20375 0.41 -0.5 4,412,606 + RR42_RS20375 0.48 +0.4 4,412,607 - RR42_RS20375 0.48 -0.7 4,412,872 + RR42_RS20375 0.86 +0.9 4,412,872 + RR42_RS20375 0.86 +0.4 4,412,872 + RR42_RS20375 0.86 +0.7 4,412,872 + RR42_RS20375 0.86 -0.1 4,412,941 + +1.0
Or see this region's nucleotide sequence