Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS20095

Experiment: R2A with Paraquat dichloride 0.064 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Paraquat dichloride 0.064 mg/ml
4,341,367	+		RR42_RS20085	0.83	-2.2
4,341,367	+		RR42_RS20085	0.83	+0.2
4,341,367	+		RR42_RS20085	0.83	+1.9
4,341,368	-		RR42_RS20085	0.84	-1.2
4,341,368	-		RR42_RS20085	0.84	+0.2
4,341,441	-				-0.1
4,341,447	+				+1.3
4,341,447	+				-1.9
4,341,448	-				-0.3
4,341,448	-				-0.8
4,341,448	-				+0.1
4,341,448	-				+0.3
4,341,517	+				-1.4
4,341,517	+				-0.9
4,341,517	+				-1.7
4,341,517	+				+0.1
4,341,517	+				+1.3
4,341,518	-				-0.8
4,341,518	-				-1.0
4,341,518	-				+0.1
4,341,518	-				-0.5
4,341,523	+				-0.1
4,341,523	+				-1.2
4,341,523	+				+0.8
4,341,523	+				-0.6
4,341,523	+				-0.4
4,341,523	+				-0.4
4,341,524	-				-0.4
4,341,524	-				+0.8
4,341,524	-				+0.3
4,341,524	-				+0.5
4,341,705	+		RR42_RS20090	0.31	-0.3
4,341,835	+		RR42_RS20090	0.49	-0.5
4,341,835	+		RR42_RS20090	0.49	+0.5
4,341,835	+		RR42_RS20090	0.49	-2.0
4,341,835	+		RR42_RS20090	0.49	+0.3
4,341,835	+		RR42_RS20090	0.49	-0.6
4,341,835	+		RR42_RS20090	0.49	-1.1
4,341,952	+		RR42_RS20090	0.65	-0.1
4,341,952	+		RR42_RS20090	0.65	+0.5
4,342,018	+		RR42_RS20090	0.74	-0.2
4,342,019	-		RR42_RS20090	0.74	+2.1
4,342,019	-		RR42_RS20090	0.74	+0.8
4,342,019	-		RR42_RS20090	0.74	-1.9
4,342,247	+				+0.2
4,342,296	-				+1.4
4,342,296	-				-0.1
4,342,321	-				-0.0
4,342,376	+		RR42_RS20095	0.14	+0.5
4,342,417	+		RR42_RS20095	0.22	+0.3
4,342,417	+		RR42_RS20095	0.22	-0.2
4,342,418	-		RR42_RS20095	0.22	+2.4
4,342,770	+				-0.7
4,342,770	+				-0.6
4,342,770	+				+0.7
4,342,770	+				+0.4
4,342,770	+				-0.1
4,342,771	-				+1.7
4,342,771	-				+0.2
4,342,771	-				-1.5
4,342,788	+				-0.8
4,342,788	+				-0.9
4,343,020	+				+1.7
4,343,021	-		RR42_RS20100	0.21	-0.4
4,343,021	-		RR42_RS20100	0.21	+0.5
4,343,021	-		RR42_RS20100	0.21	+0.7
4,343,021	-		RR42_RS20100	0.21	-0.6
4,343,068	+		RR42_RS20100	0.25	+0.2
4,343,069	-		RR42_RS20100	0.25	+0.7
4,343,069	-		RR42_RS20100	0.25	+1.7
4,343,077	+		RR42_RS20100	0.26	+0.1
4,343,078	-		RR42_RS20100	0.26	-0.3
4,343,078	-		RR42_RS20100	0.26	+1.2
4,343,119	+		RR42_RS20100	0.29	+0.3
4,343,119	+		RR42_RS20100	0.29	+0.6
4,343,120	-		RR42_RS20100	0.29	-2.1
4,343,140	+		RR42_RS20100	0.31	-1.6
4,343,140	+		RR42_RS20100	0.31	-0.3
4,343,140	+		RR42_RS20100	0.31	+1.2
4,343,140	+		RR42_RS20100	0.31	-0.3
4,343,141	-		RR42_RS20100	0.31	+0.3
4,343,141	-		RR42_RS20100	0.31	-0.8
4,343,141	-		RR42_RS20100	0.31	-0.3
4,343,236	+		RR42_RS20100	0.40	-0.5
4,343,236	+		RR42_RS20100	0.40	+1.9
4,343,236	+		RR42_RS20100	0.40	-0.1
4,343,237	-		RR42_RS20100	0.40	+0.7
4,343,237	-		RR42_RS20100	0.40	+1.5
4,343,237	-		RR42_RS20100	0.40	+1.7
4,343,237	-		RR42_RS20100	0.40	+0.9
4,343,287	+		RR42_RS20100	0.44	-1.7
4,343,398	+		RR42_RS20100	0.54	-0.6
4,343,399	-		RR42_RS20100	0.54	-0.7
4,343,399	-		RR42_RS20100	0.54	-0.3
4,343,437	+		RR42_RS20100	0.58	+0.5
4,343,437	+		RR42_RS20100	0.58	-1.5
4,343,533	+		RR42_RS20100	0.66	+1.0
4,343,534	-		RR42_RS20100	0.67	+0.7
4,343,534	-		RR42_RS20100	0.67	+0.4
4,343,534	-		RR42_RS20100	0.67	+0.1
4,343,534	-		RR42_RS20100	0.67	+0.1
4,343,539	+		RR42_RS20100	0.67	+0.7
4,343,539	+		RR42_RS20100	0.67	+1.1
4,343,540	-		RR42_RS20100	0.67	+0.2
4,343,540	-		RR42_RS20100	0.67	-1.2
4,343,540	-		RR42_RS20100	0.67	-0.7
4,343,554	+		RR42_RS20100	0.68	+1.7
4,343,554	+		RR42_RS20100	0.68	+2.7
4,343,560	+		RR42_RS20100	0.69	-1.1