Experiment: R2A with Paraquat dichloride 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS19790 and RR42_RS19795 are separated by 45 nucleotides RR42_RS19795 and RR42_RS19800 are separated by 492 nucleotides
RR42_RS19790: RR42_RS19790 - C4-dicarboxylate ABC transporter, at 4,271,154 to 4,272,575
_RS19790
RR42_RS19795: RR42_RS19795 - GntR family transcriptional regulator, at 4,272,621 to 4,273,310
_RS19795
RR42_RS19800: RR42_RS19800 - short-chain dehydrogenase, at 4,273,803 to 4,274,624
_RS19800
Position (kb)
4272
4273
4274 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 4271.756 kb on + strand, within RR42_RS19790 at 4271.831 kb on - strand, within RR42_RS19790 at 4271.850 kb on + strand, within RR42_RS19790 at 4271.850 kb on + strand, within RR42_RS19790 at 4271.850 kb on + strand, within RR42_RS19790 at 4271.851 kb on - strand, within RR42_RS19790 at 4271.880 kb on + strand, within RR42_RS19790 at 4272.160 kb on + strand, within RR42_RS19790 at 4272.164 kb on + strand, within RR42_RS19790 at 4272.165 kb on - strand, within RR42_RS19790 at 4272.165 kb on - strand, within RR42_RS19790 at 4272.165 kb on - strand, within RR42_RS19790 at 4272.182 kb on + strand, within RR42_RS19790 at 4272.182 kb on + strand, within RR42_RS19790 at 4272.183 kb on - strand, within RR42_RS19790 at 4272.573 kb on + strand at 4272.573 kb on + strand at 4272.632 kb on + strand at 4272.632 kb on + strand at 4272.632 kb on + strand at 4272.632 kb on + strand at 4272.633 kb on - strand at 4272.744 kb on + strand, within RR42_RS19795 at 4273.119 kb on + strand, within RR42_RS19795 at 4273.119 kb on + strand, within RR42_RS19795 at 4273.119 kb on + strand, within RR42_RS19795 at 4273.534 kb on - strand at 4273.573 kb on - strand at 4273.573 kb on - strand at 4273.802 kb on + strand at 4273.803 kb on - strand at 4273.850 kb on + strand at 4273.946 kb on + strand, within RR42_RS19800 at 4274.020 kb on - strand, within RR42_RS19800 at 4274.157 kb on - strand, within RR42_RS19800 at 4274.281 kb on + strand, within RR42_RS19800 at 4274.282 kb on - strand, within RR42_RS19800
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Paraquat dichloride 0.064 mg/ml remove 4,271,756 + RR42_RS19790 0.42 +0.6 4,271,831 - RR42_RS19790 0.48 +2.5 4,271,850 + RR42_RS19790 0.49 +1.7 4,271,850 + RR42_RS19790 0.49 +0.6 4,271,850 + RR42_RS19790 0.49 +0.3 4,271,851 - RR42_RS19790 0.49 +0.1 4,271,880 + RR42_RS19790 0.51 +0.7 4,272,160 + RR42_RS19790 0.71 -0.5 4,272,164 + RR42_RS19790 0.71 +3.9 4,272,165 - RR42_RS19790 0.71 +1.7 4,272,165 - RR42_RS19790 0.71 +1.9 4,272,165 - RR42_RS19790 0.71 -0.1 4,272,182 + RR42_RS19790 0.72 +1.1 4,272,182 + RR42_RS19790 0.72 +0.7 4,272,183 - RR42_RS19790 0.72 -0.0 4,272,573 + -0.8 4,272,573 + +0.7 4,272,632 + +0.4 4,272,632 + -0.6 4,272,632 + +0.6 4,272,632 + -0.9 4,272,633 - -1.6 4,272,744 + RR42_RS19795 0.18 -0.4 4,273,119 + RR42_RS19795 0.72 -0.8 4,273,119 + RR42_RS19795 0.72 -1.2 4,273,119 + RR42_RS19795 0.72 -0.1 4,273,534 - -0.5 4,273,573 - +0.7 4,273,573 - +0.5 4,273,802 + +0.2 4,273,803 - +0.6 4,273,850 + +0.5 4,273,946 + RR42_RS19800 0.17 +0.1 4,274,020 - RR42_RS19800 0.26 +0.2 4,274,157 - RR42_RS19800 0.43 -0.3 4,274,281 + RR42_RS19800 0.58 -0.6 4,274,282 - RR42_RS19800 0.58 -0.0
Or see this region's nucleotide sequence