Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS19540

Experiment: R2A with Paraquat dichloride 0.064 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Paraquat dichloride 0.064 mg/ml
4,220,228	+		RR42_RS19535	0.65	+0.1
4,220,228	+		RR42_RS19535	0.65	-1.6
4,220,228	+		RR42_RS19535	0.65	-1.7
4,220,229	-		RR42_RS19535	0.65	+1.1
4,220,516	+		RR42_RS19535	0.80	+0.7
4,220,609	+		RR42_RS19535	0.85	+1.6
4,220,610	-		RR42_RS19535	0.85	-0.2
4,220,669	+		RR42_RS19535	0.89	+0.4
4,220,753	+				-0.9
4,220,753	+				-0.5
4,220,754	-				-0.1
4,220,754	-				+0.7
4,220,781	-				+2.1
4,220,781	-				-0.1
4,220,781	-				-1.5
4,220,880	+				+0.4
4,220,880	+				+1.0
4,220,880	+				-0.1
4,220,880	+				+0.1
4,220,881	-				-0.3
4,220,881	-				+0.2
4,220,881	-				+0.1
4,220,953	-				-0.2
4,220,953	-				-0.2
4,221,009	+				+0.2
4,221,100	+				-0.1
4,221,101	-				-1.3
4,221,101	-				-0.7
4,221,213	+				-0.8
4,221,213	+				-0.0
4,221,213	+				+0.2
4,221,213	+				+0.9
4,221,214	-				-0.9
4,221,214	-				+1.4
4,221,214	-				+0.4
4,221,214	-				-0.9
4,221,214	-				+0.0
4,221,290	-				-1.5
4,221,313	+				+1.3
4,221,313	+				+0.0
4,221,315	+				-1.0
4,221,315	+				-2.4
4,221,338	+				-0.7
4,221,399	+				-0.6
4,221,399	+				-1.6
4,221,400	-				+0.9
4,221,446	+				+2.2
4,221,446	+				+0.9
4,221,446	+				-0.9
4,221,447	-				-0.5
4,221,527	+				-1.5
4,221,553	+				-0.9
4,221,553	+				-0.4
4,221,554	-				+0.1
4,221,799	+		RR42_RS19540	0.16	-0.8
4,221,799	+		RR42_RS19540	0.16	+0.8
4,221,830	-		RR42_RS19540	0.17	+0.1
4,222,009	+		RR42_RS19540	0.22	+0.1
4,222,010	-		RR42_RS19540	0.22	-1.1
4,222,010	-		RR42_RS19540	0.22	+1.1
4,222,010	-		RR42_RS19540	0.22	-0.9
4,222,010	-		RR42_RS19540	0.22	+0.1
4,222,033	+		RR42_RS19540	0.23	-0.1
4,222,033	+		RR42_RS19540	0.23	-0.3
4,222,034	-		RR42_RS19540	0.23	+0.9
4,222,114	+		RR42_RS19540	0.25	-1.5
4,222,114	+		RR42_RS19540	0.25	-0.5
4,222,189	+		RR42_RS19540	0.27	-0.3
4,222,189	+		RR42_RS19540	0.27	+0.7
4,222,190	-		RR42_RS19540	0.27	-1.5
4,222,190	-		RR42_RS19540	0.27	-0.9
4,222,190	-		RR42_RS19540	0.27	-2.7
4,222,294	+		RR42_RS19540	0.30	-0.5
4,222,294	+		RR42_RS19540	0.30	-0.7
4,222,295	-		RR42_RS19540	0.30	+0.9
4,222,295	-		RR42_RS19540	0.30	-1.7
4,222,295	-		RR42_RS19540	0.30	-0.3
4,222,315	+		RR42_RS19540	0.31	-1.3
4,222,316	-		RR42_RS19540	0.31	-0.8
4,222,316	-		RR42_RS19540	0.31	-0.6
4,222,316	-		RR42_RS19540	0.31	-1.6
4,222,426	+		RR42_RS19540	0.34	+0.1
4,222,426	+		RR42_RS19540	0.34	+0.6
4,222,426	+		RR42_RS19540	0.34	-2.7
4,222,427	-		RR42_RS19540	0.34	-0.6
4,222,669	+		RR42_RS19540	0.40	+0.5
4,222,669	+		RR42_RS19540	0.40	+0.1
4,222,669	+		RR42_RS19540	0.40	-0.5
4,222,669	+		RR42_RS19540	0.40	+0.7
4,222,669	+		RR42_RS19540	0.40	-0.3
4,222,670	-		RR42_RS19540	0.41	-1.3
4,222,798	+		RR42_RS19540	0.44	-1.5
4,222,799	-		RR42_RS19540	0.44	+0.4
4,222,799	-		RR42_RS19540	0.44	-0.4
4,222,858	+		RR42_RS19540	0.46	-0.4
4,222,858	+		RR42_RS19540	0.46	-1.2
4,222,858	+		RR42_RS19540	0.46	-0.2
4,222,999	+		RR42_RS19540	0.50	-1.2
4,223,000	-		RR42_RS19540	0.50	+1.2
4,223,000	-		RR42_RS19540	0.50	-0.7
4,223,000	-		RR42_RS19540	0.50	-0.5
4,223,107	+		RR42_RS19540	0.53	+0.9
4,223,158	+		RR42_RS19540	0.54	-0.9
4,223,159	-		RR42_RS19540	0.54	-0.8
4,223,449	+		RR42_RS19540	0.62	-1.6
4,223,449	+		RR42_RS19540	0.62	-0.7
4,223,540	+		RR42_RS19540	0.65	+0.1
4,223,541	-		RR42_RS19540	0.65	-0.3
4,223,541	-		RR42_RS19540	0.65	+2.7
4,223,721	-		RR42_RS19540	0.70	-0.2
4,223,924	-		RR42_RS19540	0.75	-0.5
4,224,319	+		RR42_RS19540	0.86	+0.5
4,224,319	+		RR42_RS19540	0.86	-1.7
4,224,320	-		RR42_RS19540	0.86	+0.1
4,224,332	-		RR42_RS19540	0.87	+0.3
4,224,332	-		RR42_RS19540	0.87	-0.3
4,224,332	-		RR42_RS19540	0.87	+0.2
4,224,349	+		RR42_RS19540	0.87	-0.1
4,224,351	+		RR42_RS19540	0.87	+0.2
4,224,351	+		RR42_RS19540	0.87	-0.8
4,224,352	-		RR42_RS19540	0.87	+1.3
4,224,412	+		RR42_RS19540	0.89	+1.7
4,224,412	+		RR42_RS19540	0.89	+0.8
4,224,413	-		RR42_RS19540	0.89	-0.4
4,224,611	-				+1.1
4,224,744	+				-1.3
4,224,812	+				+0.2
4,224,813	-				-1.9
4,225,092	-				-0.5
4,225,092	-				-0.2
4,225,107	-				-0.8
4,225,121	+				+0.8
4,225,122	-				+1.1
4,225,122	-				-0.3
4,225,236	+				-0.6
4,225,237	-				+0.5
4,225,237	-				-0.3
4,225,265	+				+1.3
4,225,315	+				+1.3
4,225,315	+				-0.7
4,225,315	+				-0.3
4,225,316	-				-0.8
4,225,363	+				-0.1
4,225,364	-				-0.8
4,225,432	+				-2.1
4,225,480	+				+0.7
4,225,540	-				-0.3
4,225,630	+				+1.3
4,225,667	-				+0.1
4,225,667	-				+1.7
4,225,700	+				+0.5
4,225,700	+				+0.3
4,225,701	-				-1.5
4,225,705	-				+0.2
4,225,705	-				+1.1
4,225,705	-				-1.6
4,225,805	+		RR42_RS19545	0.25	+1.3
4,225,805	+		RR42_RS19545	0.25	+0.9
4,225,805	+		RR42_RS19545	0.25	-0.7
4,225,806	-		RR42_RS19545	0.25	-1.2
4,225,806	-		RR42_RS19545	0.25	+1.3
4,225,806	-		RR42_RS19545	0.25	-0.6
4,225,806	-		RR42_RS19545	0.25	+0.0
4,225,806	-		RR42_RS19545	0.25	+1.1
4,225,806	-		RR42_RS19545	0.25	+0.7