Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS19250

Experiment: R2A with Paraquat dichloride 0.064 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS19240 and RR42_RS19245 are separated by 2 nucleotidesRR42_RS19245 and RR42_RS19250 overlap by 4 nucleotidesRR42_RS19250 and RR42_RS19255 are separated by 11 nucleotidesRR42_RS19255 and RR42_RS19260 are separated by 236 nucleotides RR42_RS19240: RR42_RS19240 - 50S ribosomal protein L2, at 4,155,745 to 4,156,575 _RS19240 RR42_RS19245: RR42_RS19245 - 50S ribosomal protein L23, at 4,156,578 to 4,156,892 _RS19245 RR42_RS19250: RR42_RS19250 - 50S ribosomal protein L4, at 4,156,889 to 4,157,509 _RS19250 RR42_RS19255: RR42_RS19255 - 50S ribosomal protein L3, at 4,157,521 to 4,158,171 _RS19255 RR42_RS19260: RR42_RS19260 - nitrilotriacetate monooxygenase, at 4,158,408 to 4,158,899 _RS19260 Position (kb) 4156 4157 4158Strain fitness (log2 ratio) -1 0 1 2at 4158.358 kb on + strandat 4158.358 kb on + strandat 4158.358 kb on + strandat 4158.359 kb on - strandat 4158.359 kb on - strandat 4158.359 kb on - strandat 4158.359 kb on - strandat 4158.409 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Paraquat dichloride 0.064 mg/ml
remove
4,158,358 + -0.5
4,158,358 + -1.4
4,158,358 + -0.4
4,158,359 - -0.3
4,158,359 - +2.0
4,158,359 - -0.5
4,158,359 - +0.6
4,158,409 + +1.5

Or see this region's nucleotide sequence