Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS18160

Experiment: R2A with Paraquat dichloride 0.064 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Paraquat dichloride 0.064 mg/ml
3,928,990	+		RR42_RS18155	0.14	-0.5
3,928,990	+		RR42_RS18155	0.14	+0.3
3,928,990	+		RR42_RS18155	0.14	-0.8
3,928,990	+		RR42_RS18155	0.14	-1.1
3,928,990	+		RR42_RS18155	0.14	-0.9
3,928,990	+		RR42_RS18155	0.14	+0.1
3,928,991	-		RR42_RS18155	0.14	-1.7
3,928,991	-		RR42_RS18155	0.14	+0.5
3,928,991	-		RR42_RS18155	0.14	-0.4
3,928,991	-		RR42_RS18155	0.14	-0.8
3,929,044	+		RR42_RS18155	0.22	-0.3
3,929,044	+		RR42_RS18155	0.22	-1.0
3,929,087	-		RR42_RS18155	0.29	-0.4
3,929,087	-		RR42_RS18155	0.29	-0.1
3,929,098	+		RR42_RS18155	0.30	+0.8
3,929,099	-		RR42_RS18155	0.30	+0.1
3,929,099	-		RR42_RS18155	0.30	-1.2
3,929,114	+		RR42_RS18155	0.33	+2.6
3,929,115	-		RR42_RS18155	0.33	-1.9
3,929,150	-		RR42_RS18155	0.38	+0.4
3,929,185	+		RR42_RS18155	0.43	-0.9
3,929,186	-		RR42_RS18155	0.44	+0.3
3,929,186	-		RR42_RS18155	0.44	-0.7
3,929,186	-		RR42_RS18155	0.44	-0.9
3,929,186	-		RR42_RS18155	0.44	+0.6
3,929,225	+		RR42_RS18155	0.49	-1.1
3,929,225	+		RR42_RS18155	0.49	+0.7
3,929,225	+		RR42_RS18155	0.49	-0.6
3,929,225	+		RR42_RS18155	0.49	-1.3
3,929,225	+		RR42_RS18155	0.49	-0.5
3,929,225	+		RR42_RS18155	0.49	-1.6
3,929,226	-		RR42_RS18155	0.50	-1.1
3,929,226	-		RR42_RS18155	0.50	-0.7
3,929,326	+		RR42_RS18155	0.65	+1.0
3,929,327	-		RR42_RS18155	0.65	+0.4
3,929,327	-		RR42_RS18155	0.65	-0.2
3,929,327	-		RR42_RS18155	0.65	+0.0
3,929,327	-		RR42_RS18155	0.65	+0.4
3,929,341	+		RR42_RS18155	0.67	-0.6
3,929,341	+		RR42_RS18155	0.67	-0.1
3,929,341	+		RR42_RS18155	0.67	+0.2
3,929,341	+		RR42_RS18155	0.67	+0.1
3,929,342	-		RR42_RS18155	0.67	-0.6
3,929,342	-		RR42_RS18155	0.67	-2.4
3,929,344	+		RR42_RS18155	0.67	-1.7
3,929,344	+		RR42_RS18155	0.67	-1.3
3,929,345	-		RR42_RS18155	0.67	-1.5
3,929,345	-		RR42_RS18155	0.67	+1.0
3,929,347	+		RR42_RS18155	0.68	+1.1
3,929,347	+		RR42_RS18155	0.68	+1.6
3,929,347	+		RR42_RS18155	0.68	-0.6
3,929,348	-		RR42_RS18155	0.68	+1.6
3,929,418	-		RR42_RS18155	0.78	-1.0
3,929,419	+		RR42_RS18155	0.79	+1.1
3,929,419	+		RR42_RS18155	0.79	+1.3
3,929,419	+		RR42_RS18155	0.79	+2.6
3,929,420	-		RR42_RS18155	0.79	+0.4
3,929,420	-		RR42_RS18155	0.79	+0.0
3,929,420	-		RR42_RS18155	0.79	+0.2
3,929,797	+				+0.2
3,929,797	+				+0.0
3,929,798	-				-0.0
3,929,798	-				+1.6
3,929,864	-				+0.9
3,929,892	+				+0.3
3,929,892	+				+0.2
3,929,893	-				+0.1
3,929,944	+				-0.7
3,929,962	+		RR42_RS18160	0.10	+0.3
3,929,963	-		RR42_RS18160	0.10	+1.6
3,930,109	+		RR42_RS18160	0.19	-0.6
3,930,109	+		RR42_RS18160	0.19	+0.4
3,930,109	+		RR42_RS18160	0.19	-0.0
3,930,110	-		RR42_RS18160	0.19	+0.1
3,930,110	-		RR42_RS18160	0.19	+0.2
3,930,110	-		RR42_RS18160	0.19	-0.4
3,930,213	-		RR42_RS18160	0.25	-0.8
3,930,445	-		RR42_RS18160	0.38	-2.6
3,930,448	+		RR42_RS18160	0.38	-1.3
3,930,448	+		RR42_RS18160	0.38	+0.4
3,930,448	+		RR42_RS18160	0.38	+0.4
3,930,448	+		RR42_RS18160	0.38	-1.0
3,930,448	+		RR42_RS18160	0.38	+0.3
3,930,449	-		RR42_RS18160	0.39	+1.6
3,930,449	-		RR42_RS18160	0.39	+0.4
3,930,501	+		RR42_RS18160	0.42	+1.0
3,930,767	-		RR42_RS18160	0.57	-0.4
3,930,797	+		RR42_RS18160	0.59	-0.4
3,930,920	-		RR42_RS18160	0.66	+0.3
3,930,991	+		RR42_RS18160	0.70	-0.9
3,931,171	+		RR42_RS18160	0.80	-0.3
3,931,172	-		RR42_RS18160	0.80	+0.6
3,931,172	-		RR42_RS18160	0.80	-0.0
3,931,411	+				-0.6
3,931,411	+				+0.8
3,931,412	-				-0.4
3,931,412	-				-0.5
3,931,412	-				-1.0
3,931,431	+				-0.0
3,931,431	+				-0.0
3,931,431	+				+3.1
3,931,431	+				-0.7
3,931,432	-				-0.9
3,931,432	-				+0.6
3,931,432	-				+1.6
3,931,432	-				-0.6
3,931,432	-				-1.1
3,931,432	-				+0.3
3,931,581	-				-0.5
3,931,581	-				-0.4
3,931,660	+				+0.7
3,931,661	-				+0.6
3,931,662	+				+1.0
3,931,760	+				+0.4
3,932,116	+		RR42_RS18165	0.17	-0.0
3,932,116	+		RR42_RS18165	0.17	+0.5
3,932,116	+		RR42_RS18165	0.17	-0.7
3,932,117	-		RR42_RS18165	0.17	-0.0
3,932,167	+		RR42_RS18165	0.18	+0.9
3,932,168	-		RR42_RS18165	0.18	-1.4