Experiment: R2A with Paraquat dichloride 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS17585 and RR42_RS17590 overlap by 1 nucleotides RR42_RS17590 and RR42_RS17595 are separated by 54 nucleotides RR42_RS17595 and RR42_RS17600 are separated by 83 nucleotides RR42_RS17600 and RR42_RS17605 overlap by 4 nucleotides
RR42_RS17585: RR42_RS17585 - glyoxalase, at 3,806,414 to 3,806,854
_RS17585
RR42_RS17590: RR42_RS17590 - 16S rRNA methyltransferase, at 3,806,854 to 3,807,612
_RS17590
RR42_RS17595: RR42_RS17595 - hypothetical protein, at 3,807,667 to 3,808,257
_RS17595
RR42_RS17600: RR42_RS17600 - ribonuclease inhibitor, at 3,808,341 to 3,808,940
_RS17600
RR42_RS17605: RR42_RS17605 - ribonuclease, at 3,808,937 to 3,809,305
_RS17605
Position (kb)
3807
3808
3809 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3806.669 kb on + strand, within RR42_RS17585 at 3806.669 kb on + strand, within RR42_RS17585 at 3806.669 kb on + strand, within RR42_RS17585 at 3806.670 kb on - strand, within RR42_RS17585 at 3806.762 kb on + strand, within RR42_RS17585 at 3807.327 kb on - strand, within RR42_RS17590 at 3807.327 kb on - strand, within RR42_RS17590 at 3807.378 kb on - strand, within RR42_RS17590 at 3807.405 kb on - strand, within RR42_RS17590 at 3807.552 kb on + strand at 3807.553 kb on - strand at 3807.596 kb on + strand at 3807.674 kb on + strand at 3807.675 kb on - strand at 3807.796 kb on - strand, within RR42_RS17595 at 3807.796 kb on - strand, within RR42_RS17595 at 3808.308 kb on + strand at 3808.966 kb on - strand at 3808.981 kb on - strand, within RR42_RS17605 at 3808.983 kb on + strand, within RR42_RS17605 at 3808.984 kb on - strand, within RR42_RS17605 at 3809.019 kb on - strand, within RR42_RS17605 at 3809.019 kb on - strand, within RR42_RS17605 at 3809.019 kb on - strand, within RR42_RS17605 at 3809.019 kb on - strand, within RR42_RS17605 at 3809.019 kb on - strand, within RR42_RS17605 at 3809.019 kb on - strand, within RR42_RS17605 at 3809.019 kb on - strand, within RR42_RS17605 at 3809.077 kb on - strand, within RR42_RS17605 at 3809.077 kb on - strand, within RR42_RS17605 at 3809.077 kb on - strand, within RR42_RS17605 at 3809.110 kb on - strand, within RR42_RS17605 at 3809.110 kb on - strand, within RR42_RS17605 at 3809.110 kb on - strand, within RR42_RS17605 at 3809.110 kb on - strand, within RR42_RS17605 at 3809.140 kb on - strand, within RR42_RS17605 at 3809.205 kb on - strand, within RR42_RS17605
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Paraquat dichloride 0.064 mg/ml remove 3,806,669 + RR42_RS17585 0.58 -0.7 3,806,669 + RR42_RS17585 0.58 +0.1 3,806,669 + RR42_RS17585 0.58 +0.0 3,806,670 - RR42_RS17585 0.58 -0.5 3,806,762 + RR42_RS17585 0.79 -0.6 3,807,327 - RR42_RS17590 0.62 +1.8 3,807,327 - RR42_RS17590 0.62 -0.5 3,807,378 - RR42_RS17590 0.69 +2.5 3,807,405 - RR42_RS17590 0.73 +0.6 3,807,552 + +0.1 3,807,553 - -0.0 3,807,596 + -0.4 3,807,674 + +0.1 3,807,675 - -0.5 3,807,796 - RR42_RS17595 0.22 -0.7 3,807,796 - RR42_RS17595 0.22 -0.9 3,808,308 + +1.9 3,808,966 - +0.5 3,808,981 - RR42_RS17605 0.12 -2.2 3,808,983 + RR42_RS17605 0.12 -0.1 3,808,984 - RR42_RS17605 0.13 -0.8 3,809,019 - RR42_RS17605 0.22 -0.4 3,809,019 - RR42_RS17605 0.22 +1.3 3,809,019 - RR42_RS17605 0.22 -1.6 3,809,019 - RR42_RS17605 0.22 -0.2 3,809,019 - RR42_RS17605 0.22 +0.1 3,809,019 - RR42_RS17605 0.22 -0.5 3,809,019 - RR42_RS17605 0.22 -0.7 3,809,077 - RR42_RS17605 0.38 -0.9 3,809,077 - RR42_RS17605 0.38 +0.9 3,809,077 - RR42_RS17605 0.38 -0.3 3,809,110 - RR42_RS17605 0.47 -0.4 3,809,110 - RR42_RS17605 0.47 +0.5 3,809,110 - RR42_RS17605 0.47 +0.3 3,809,110 - RR42_RS17605 0.47 -0.1 3,809,140 - RR42_RS17605 0.55 +0.1 3,809,205 - RR42_RS17605 0.73 -0.9
Or see this region's nucleotide sequence