Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS15645

Experiment: R2A with Paraquat dichloride 0.064 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Paraquat dichloride 0.064 mg/ml
3,377,155	+				-0.1
3,377,206	+		RR42_RS15635	0.18	-0.3
3,377,207	-		RR42_RS15635	0.18	-0.1
3,377,207	-		RR42_RS15635	0.18	+0.8
3,377,207	-		RR42_RS15635	0.18	+0.7
3,377,208	+		RR42_RS15635	0.18	-2.7
3,377,208	+		RR42_RS15635	0.18	-1.9
3,377,208	+		RR42_RS15635	0.18	-0.8
3,377,208	+		RR42_RS15635	0.18	+0.6
3,377,209	-		RR42_RS15635	0.19	+1.4
3,377,209	-		RR42_RS15635	0.19	-0.8
3,377,506	+		RR42_RS15635	0.71	-0.5
3,377,506	+		RR42_RS15635	0.71	-0.1
3,377,506	+		RR42_RS15635	0.71	+0.7
3,377,506	+		RR42_RS15635	0.71	+0.7
3,377,507	-		RR42_RS15635	0.72	-0.5
3,377,507	-		RR42_RS15635	0.72	+0.6
3,377,507	-		RR42_RS15635	0.72	+0.3
3,377,507	-		RR42_RS15635	0.72	+0.9
3,377,507	-		RR42_RS15635	0.72	+1.0
3,377,508	+		RR42_RS15635	0.72	-0.4
3,377,509	-		RR42_RS15635	0.72	-0.4
3,377,509	-		RR42_RS15635	0.72	-1.2
3,377,509	-		RR42_RS15635	0.72	-0.4
3,377,572	-		RR42_RS15635	0.83	+0.7
3,377,572	-		RR42_RS15635	0.83	-0.6
3,377,859	+		RR42_RS15640	0.61	-0.2
3,378,007	+				-0.4
3,378,007	+				+0.1
3,378,007	+				-3.2
3,378,008	-				-0.0
3,378,008	-				+0.8
3,378,008	-				-2.3
3,378,008	-				-0.3
3,378,008	-				+0.1
3,378,064	+				+0.1
3,378,065	-				+0.1
3,378,065	-				+0.1
3,378,324	+		RR42_RS15645	0.23	-0.4
3,378,324	+		RR42_RS15645	0.23	-0.4
3,378,324	+		RR42_RS15645	0.23	-1.1
3,378,324	+		RR42_RS15645	0.23	+0.1
3,378,325	-		RR42_RS15645	0.24	-1.2
3,378,330	+		RR42_RS15645	0.24	-0.3
3,378,331	-		RR42_RS15645	0.24	+0.0
3,378,331	-		RR42_RS15645	0.24	-0.2
3,378,339	-		RR42_RS15645	0.25	+0.4
3,378,341	+		RR42_RS15645	0.26	-0.2
3,378,341	+		RR42_RS15645	0.26	-0.6
3,378,342	-		RR42_RS15645	0.26	-0.2
3,378,342	-		RR42_RS15645	0.26	-1.3
3,378,342	-		RR42_RS15645	0.26	-0.3
3,378,342	-		RR42_RS15645	0.26	-0.6
3,378,342	-		RR42_RS15645	0.26	-0.3
3,378,420	+		RR42_RS15645	0.36	-0.9
3,378,420	+		RR42_RS15645	0.36	+1.1
3,378,421	-		RR42_RS15645	0.36	-2.4
3,378,421	-		RR42_RS15645	0.36	-0.3
3,378,555	+		RR42_RS15645	0.53	-0.4
3,378,555	+		RR42_RS15645	0.53	-0.8
3,378,555	+		RR42_RS15645	0.53	-0.7
3,378,555	+		RR42_RS15645	0.53	+0.2
3,378,556	-		RR42_RS15645	0.53	-0.8
3,378,556	-		RR42_RS15645	0.53	+0.8
3,378,834	+		RR42_RS15645	0.88	-1.6
3,378,834	+		RR42_RS15645	0.88	+0.4
3,378,850	+				-1.8
3,378,850	+				-0.2
3,378,850	+				+0.7
3,378,851	-				+0.9
3,378,851	-				-0.3
3,378,851	-				+0.9
3,378,851	-				+0.1
3,379,206	+		RR42_RS15650	0.24	+1.2
3,379,206	+		RR42_RS15650	0.24	+0.3
3,379,207	-		RR42_RS15650	0.25	+0.0
3,379,280	+		RR42_RS15650	0.31	+2.4
3,379,281	-		RR42_RS15650	0.31	-0.4
3,379,334	+		RR42_RS15650	0.36	-0.6
3,379,760	+		RR42_RS15650	0.73	-0.1
3,379,899	-		RR42_RS15650	0.85	+1.4
3,379,899	-		RR42_RS15650	0.85	+0.1
3,379,899	-		RR42_RS15650	0.85	-0.6