Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS14985

Experiment: R2A with Paraquat dichloride 0.064 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS14975 and RR42_RS14980 are separated by 225 nucleotidesRR42_RS14980 and RR42_RS14985 are separated by 130 nucleotidesRR42_RS14985 and RR42_RS14990 are separated by 111 nucleotides RR42_RS14975: RR42_RS14975 - DNA primase, at 3,237,527 to 3,239,341 _RS14975 RR42_RS14980: RR42_RS14980 - glutamyl-tRNA amidotransferase, at 3,239,567 to 3,240,016 _RS14980 RR42_RS14985: RR42_RS14985 - 30S ribosomal protein S21, at 3,240,147 to 3,240,359 _RS14985 RR42_RS14990: RR42_RS14990 - membrane protein, at 3,240,471 to 3,241,745 _RS14990 Position (kb) 3240 3241Strain fitness (log2 ratio) -1 0 1 2at 3239.357 kb on - strandat 3239.440 kb on - strandat 3239.446 kb on - strandat 3239.446 kb on - strandat 3239.453 kb on - strandat 3239.513 kb on + strandat 3239.551 kb on + strandat 3239.660 kb on - strand, within RR42_RS14980at 3239.751 kb on + strand, within RR42_RS14980at 3239.751 kb on + strand, within RR42_RS14980at 3239.751 kb on + strand, within RR42_RS14980at 3239.752 kb on - strand, within RR42_RS14980at 3240.022 kb on + strandat 3240.152 kb on - strandat 3240.152 kb on - strandat 3240.191 kb on - strand, within RR42_RS14985at 3240.371 kb on - strandat 3240.403 kb on - strandat 3240.403 kb on - strandat 3240.410 kb on + strandat 3240.433 kb on + strandat 3240.557 kb on + strandat 3240.557 kb on + strandat 3240.558 kb on - strandat 3240.559 kb on + strandat 3240.560 kb on - strandat 3240.604 kb on + strand, within RR42_RS14990at 3240.604 kb on + strand, within RR42_RS14990at 3240.767 kb on + strand, within RR42_RS14990at 3240.767 kb on + strand, within RR42_RS14990

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Paraquat dichloride 0.064 mg/ml
remove
3,239,357 - -1.0
3,239,440 - +0.1
3,239,446 - -0.8
3,239,446 - +1.2
3,239,453 - -0.5
3,239,513 + +0.7
3,239,551 + +0.3
3,239,660 - RR42_RS14980 0.21 +0.9
3,239,751 + RR42_RS14980 0.41 -0.4
3,239,751 + RR42_RS14980 0.41 -0.3
3,239,751 + RR42_RS14980 0.41 +0.0
3,239,752 - RR42_RS14980 0.41 +1.3
3,240,022 + -0.3
3,240,152 - -0.3
3,240,152 - +0.3
3,240,191 - RR42_RS14985 0.21 -1.6
3,240,371 - -0.0
3,240,403 - -1.6
3,240,403 - +1.9
3,240,410 + -0.3
3,240,433 + -1.0
3,240,557 + +0.2
3,240,557 + +1.8
3,240,558 - -0.3
3,240,559 + -0.8
3,240,560 - -0.8
3,240,604 + RR42_RS14990 0.10 +1.0
3,240,604 + RR42_RS14990 0.10 +1.7
3,240,767 + RR42_RS14990 0.23 +1.2
3,240,767 + RR42_RS14990 0.23 -0.5

Or see this region's nucleotide sequence