Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS14310

Experiment: R2A with Paraquat dichloride 0.064 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Paraquat dichloride 0.064 mg/ml
3,074,070	+		RR42_RS14305	0.46	+1.2
3,074,070	+		RR42_RS14305	0.46	+1.2
3,074,072	+		RR42_RS14305	0.46	-1.7
3,074,073	-		RR42_RS14305	0.46	-0.7
3,074,073	-		RR42_RS14305	0.46	+1.2
3,074,073	-		RR42_RS14305	0.46	-0.1
3,074,083	-		RR42_RS14305	0.47	-0.2
3,074,148	+		RR42_RS14305	0.52	-0.1
3,074,148	+		RR42_RS14305	0.52	-0.5
3,074,149	-		RR42_RS14305	0.52	+0.6
3,074,149	-		RR42_RS14305	0.52	+1.7
3,074,160	-		RR42_RS14305	0.53	-1.5
3,074,253	+		RR42_RS14305	0.61	-0.6
3,074,253	+		RR42_RS14305	0.61	-0.8
3,074,253	+		RR42_RS14305	0.61	+0.1
3,074,253	+		RR42_RS14305	0.61	-1.2
3,074,254	-		RR42_RS14305	0.61	+0.5
3,074,403	+		RR42_RS14305	0.74	-0.3
3,074,403	+		RR42_RS14305	0.74	-0.5
3,074,404	-		RR42_RS14305	0.74	-0.3
3,074,740	-				+0.4
3,074,802	-				-0.8
3,074,984	+		RR42_RS14310	0.12	+0.4
3,074,984	+		RR42_RS14310	0.12	+0.3
3,074,984	+		RR42_RS14310	0.12	-1.2
3,074,985	-		RR42_RS14310	0.12	-2.4
3,074,985	-		RR42_RS14310	0.12	-1.1
3,075,074	+		RR42_RS14310	0.16	+1.7
3,075,074	+		RR42_RS14310	0.16	+2.0
3,075,075	-		RR42_RS14310	0.16	+0.3
3,075,305	-		RR42_RS14310	0.28	+0.4
3,075,305	-		RR42_RS14310	0.28	+0.5
3,075,391	+		RR42_RS14310	0.32	-0.5
3,075,556	-		RR42_RS14310	0.40	-0.6
3,075,779	+		RR42_RS14310	0.51	+0.2
3,075,779	+		RR42_RS14310	0.51	+2.0
3,075,780	-		RR42_RS14310	0.51	-0.2
3,075,780	-		RR42_RS14310	0.51	+0.0
3,075,935	+		RR42_RS14310	0.59	-0.9
3,075,935	+		RR42_RS14310	0.59	-0.9
3,075,936	-		RR42_RS14310	0.59	-0.7
3,075,936	-		RR42_RS14310	0.59	-0.1
3,075,936	-		RR42_RS14310	0.59	+0.0
3,075,936	-		RR42_RS14310	0.59	+0.1
3,075,999	-		RR42_RS14310	0.62	-0.7
3,075,999	-		RR42_RS14310	0.62	-1.0
3,076,001	+		RR42_RS14310	0.62	-0.1
3,076,001	+		RR42_RS14310	0.62	+0.0
3,076,001	+		RR42_RS14310	0.62	+0.2
3,076,001	+		RR42_RS14310	0.62	+2.3
3,076,002	-		RR42_RS14310	0.62	+1.3
3,076,002	-		RR42_RS14310	0.62	-0.1
3,076,002	-		RR42_RS14310	0.62	-1.1
3,076,002	-		RR42_RS14310	0.62	-1.4
3,076,002	-		RR42_RS14310	0.62	-1.2
3,076,179	-		RR42_RS14310	0.70	-0.1
3,076,202	+		RR42_RS14310	0.72	-0.9
3,076,226	+		RR42_RS14310	0.73	-0.2
3,076,226	+		RR42_RS14310	0.73	+1.3
3,076,250	+		RR42_RS14310	0.74	+0.4
3,076,250	+		RR42_RS14310	0.74	-0.3
3,076,251	-		RR42_RS14310	0.74	+0.5
3,076,251	-		RR42_RS14310	0.74	+1.7
3,076,386	+		RR42_RS14310	0.81	+0.3
3,076,387	-		RR42_RS14310	0.81	-0.9
3,076,485	+		RR42_RS14310	0.85	+0.8
3,076,486	-		RR42_RS14310	0.85	-1.0
3,076,724	+				+1.4
3,076,724	+				+0.1
3,076,725	-				-0.6
3,076,781	+				-0.5
3,076,809	+				-0.2
3,076,809	+				-1.9
3,076,809	+				-0.6
3,076,809	+				-1.6
3,076,809	+				-1.6
3,076,810	-				-1.2
3,076,810	-				-1.3
3,076,810	-				+4.3
3,076,810	-				-0.0
3,076,842	+				+1.4
3,076,842	+				+0.2
3,076,843	-				+0.1
3,076,922	+				+0.4
3,076,922	+				-0.3
3,076,922	+				-0.7
3,076,922	+				+0.0
3,076,923	-				+0.5
3,076,923	-				-1.1
3,076,923	-				+0.2
3,076,923	-				+0.3
3,076,923	-				+1.8
3,076,927	-				-1.0
3,076,927	-				+0.7
3,076,927	-				+0.9
3,077,071	+		RR42_RS14315	0.44	+0.4
3,077,133	-		RR42_RS14315	0.71	+1.3
3,077,133	-		RR42_RS14315	0.71	-0.7
3,077,133	-		RR42_RS14315	0.71	-0.7
3,077,133	-		RR42_RS14315	0.71	+0.4
3,077,133	-		RR42_RS14315	0.71	-0.4
3,077,133	-		RR42_RS14315	0.71	+1.4
3,077,367	-		RR42_RS14320	0.11	-1.2
3,077,367	-		RR42_RS14320	0.11	+0.3
3,077,567	+		RR42_RS14320	0.28	+0.4
3,077,568	-		RR42_RS14320	0.28	-0.2
3,077,568	-		RR42_RS14320	0.28	-0.2
3,077,568	-		RR42_RS14320	0.28	-0.6