Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS13395

Experiment: R2A with Paraquat dichloride 0.064 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Paraquat dichloride 0.064 mg/ml
2,889,402	-				+1.4
2,889,465	+				-0.5
2,889,466	-				+1.1
2,889,466	-				-1.1
2,889,516	+		RR42_RS13390	0.14	-0.2
2,889,516	+		RR42_RS13390	0.14	+0.1
2,889,516	+		RR42_RS13390	0.14	-1.1
2,889,516	+		RR42_RS13390	0.14	+0.3
2,889,516	+		RR42_RS13390	0.14	+0.2
2,889,517	-		RR42_RS13390	0.15	-0.9
2,889,517	-		RR42_RS13390	0.15	+0.2
2,889,517	-		RR42_RS13390	0.15	-0.4
2,889,517	-		RR42_RS13390	0.15	+2.2
2,889,581	-		RR42_RS13390	0.23	+0.4
2,889,765	+		RR42_RS13390	0.46	-0.2
2,889,838	-		RR42_RS13390	0.55	-0.0
2,889,838	-		RR42_RS13390	0.55	-0.7
2,889,838	-		RR42_RS13390	0.55	+0.1
2,889,868	-		RR42_RS13390	0.59	-1.9
2,889,915	+		RR42_RS13390	0.65	-0.8
2,889,915	+		RR42_RS13390	0.65	+3.2
2,890,137	+				-0.4
2,890,137	+				-0.4
2,890,137	+				+0.2
2,890,138	-				-0.3
2,890,138	-				-0.2
2,890,138	-				+0.9
2,890,157	+				-0.1
2,890,157	+				-0.8
2,890,157	+				+0.8
2,890,158	-				-0.2
2,890,188	+				-0.8
2,890,188	+				+0.2
2,890,188	+				-0.4
2,890,189	-				+0.7
2,890,225	+				-0.1
2,890,336	+				-0.1
2,890,336	+				-0.3
2,890,337	-				+1.6
2,890,347	-				+0.0
2,890,567	-		RR42_RS13395	0.32	+1.5
2,890,711	+		RR42_RS13395	0.49	+0.1
2,890,754	-		RR42_RS13395	0.54	+1.2
2,890,813	+		RR42_RS13395	0.60	+0.4
2,890,822	+		RR42_RS13395	0.62	+0.5
2,890,822	+		RR42_RS13395	0.62	-0.1
2,890,909	+		RR42_RS13395	0.72	+0.9
2,890,910	-		RR42_RS13395	0.72	+1.1
2,891,190	-				-0.3
2,891,261	-				-1.3
2,891,501	-				+0.2
2,891,501	-				-1.4
2,891,524	-				-0.6
2,891,548	+				-0.6
2,891,549	-				+0.1
2,891,549	-				-1.4
2,891,734	+		RR42_RS13405	0.15	-0.1
2,891,741	+		RR42_RS13405	0.15	-0.1
2,891,742	-		RR42_RS13405	0.15	+0.3
2,891,954	+		RR42_RS13405	0.33	-0.4
2,891,955	-		RR42_RS13405	0.33	+0.9
2,891,955	-		RR42_RS13405	0.33	+0.7
2,891,955	-		RR42_RS13405	0.33	-0.5
2,892,059	+		RR42_RS13405	0.41	+0.4
2,892,095	+		RR42_RS13405	0.44	+0.4
2,892,095	+		RR42_RS13405	0.44	-0.8
2,892,095	+		RR42_RS13405	0.44	+0.4
2,892,096	-		RR42_RS13405	0.44	-1.5