Experiment: R2A with Paraquat dichloride 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS13390 and RR42_RS13395 are separated by 105 nucleotides RR42_RS13395 and RR42_RS13400 are separated by 189 nucleotides RR42_RS13400 and RR42_RS13405 are separated by 140 nucleotides
RR42_RS13390: RR42_RS13390 - enoyl-ACP reductase, at 2,889,402 to 2,890,190
_RS13390
RR42_RS13395: RR42_RS13395 - hydrolase, at 2,890,296 to 2,891,150
_RS13395
RR42_RS13400: RR42_RS13400 - tRNA-Arg, at 2,891,340 to 2,891,416
_RS13400
RR42_RS13405: RR42_RS13405 - diguanylate cyclase, at 2,891,557 to 2,892,774
_RS13405
Position (kb)
2890
2891
2892 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2889.402 kb on - strand at 2889.465 kb on + strand at 2889.466 kb on - strand at 2889.466 kb on - strand at 2889.516 kb on + strand, within RR42_RS13390 at 2889.516 kb on + strand, within RR42_RS13390 at 2889.516 kb on + strand, within RR42_RS13390 at 2889.516 kb on + strand, within RR42_RS13390 at 2889.516 kb on + strand, within RR42_RS13390 at 2889.517 kb on - strand, within RR42_RS13390 at 2889.517 kb on - strand, within RR42_RS13390 at 2889.517 kb on - strand, within RR42_RS13390 at 2889.517 kb on - strand, within RR42_RS13390 at 2889.581 kb on - strand, within RR42_RS13390 at 2889.765 kb on + strand, within RR42_RS13390 at 2889.838 kb on - strand, within RR42_RS13390 at 2889.838 kb on - strand, within RR42_RS13390 at 2889.838 kb on - strand, within RR42_RS13390 at 2889.868 kb on - strand, within RR42_RS13390 at 2889.915 kb on + strand, within RR42_RS13390 at 2889.915 kb on + strand, within RR42_RS13390 at 2890.137 kb on + strand at 2890.137 kb on + strand at 2890.137 kb on + strand at 2890.138 kb on - strand at 2890.138 kb on - strand at 2890.138 kb on - strand at 2890.157 kb on + strand at 2890.157 kb on + strand at 2890.157 kb on + strand at 2890.158 kb on - strand at 2890.188 kb on + strand at 2890.188 kb on + strand at 2890.188 kb on + strand at 2890.189 kb on - strand at 2890.225 kb on + strand at 2890.336 kb on + strand at 2890.336 kb on + strand at 2890.337 kb on - strand at 2890.347 kb on - strand at 2890.567 kb on - strand, within RR42_RS13395 at 2890.711 kb on + strand, within RR42_RS13395 at 2890.754 kb on - strand, within RR42_RS13395 at 2890.813 kb on + strand, within RR42_RS13395 at 2890.822 kb on + strand, within RR42_RS13395 at 2890.822 kb on + strand, within RR42_RS13395 at 2890.909 kb on + strand, within RR42_RS13395 at 2890.910 kb on - strand, within RR42_RS13395 at 2891.190 kb on - strand at 2891.261 kb on - strand at 2891.501 kb on - strand at 2891.501 kb on - strand at 2891.524 kb on - strand at 2891.548 kb on + strand at 2891.549 kb on - strand at 2891.549 kb on - strand at 2891.734 kb on + strand, within RR42_RS13405 at 2891.741 kb on + strand, within RR42_RS13405 at 2891.742 kb on - strand, within RR42_RS13405 at 2891.954 kb on + strand, within RR42_RS13405 at 2891.955 kb on - strand, within RR42_RS13405 at 2891.955 kb on - strand, within RR42_RS13405 at 2891.955 kb on - strand, within RR42_RS13405 at 2892.059 kb on + strand, within RR42_RS13405 at 2892.095 kb on + strand, within RR42_RS13405 at 2892.095 kb on + strand, within RR42_RS13405 at 2892.095 kb on + strand, within RR42_RS13405 at 2892.096 kb on - strand, within RR42_RS13405
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Paraquat dichloride 0.064 mg/ml remove 2,889,402 - +1.4 2,889,465 + -0.5 2,889,466 - +1.1 2,889,466 - -1.1 2,889,516 + RR42_RS13390 0.14 -0.2 2,889,516 + RR42_RS13390 0.14 +0.1 2,889,516 + RR42_RS13390 0.14 -1.1 2,889,516 + RR42_RS13390 0.14 +0.3 2,889,516 + RR42_RS13390 0.14 +0.2 2,889,517 - RR42_RS13390 0.15 -0.9 2,889,517 - RR42_RS13390 0.15 +0.2 2,889,517 - RR42_RS13390 0.15 -0.4 2,889,517 - RR42_RS13390 0.15 +2.2 2,889,581 - RR42_RS13390 0.23 +0.4 2,889,765 + RR42_RS13390 0.46 -0.2 2,889,838 - RR42_RS13390 0.55 -0.0 2,889,838 - RR42_RS13390 0.55 -0.7 2,889,838 - RR42_RS13390 0.55 +0.1 2,889,868 - RR42_RS13390 0.59 -1.9 2,889,915 + RR42_RS13390 0.65 -0.8 2,889,915 + RR42_RS13390 0.65 +3.2 2,890,137 + -0.4 2,890,137 + -0.4 2,890,137 + +0.2 2,890,138 - -0.3 2,890,138 - -0.2 2,890,138 - +0.9 2,890,157 + -0.1 2,890,157 + -0.8 2,890,157 + +0.8 2,890,158 - -0.2 2,890,188 + -0.8 2,890,188 + +0.2 2,890,188 + -0.4 2,890,189 - +0.7 2,890,225 + -0.1 2,890,336 + -0.1 2,890,336 + -0.3 2,890,337 - +1.6 2,890,347 - +0.0 2,890,567 - RR42_RS13395 0.32 +1.5 2,890,711 + RR42_RS13395 0.49 +0.1 2,890,754 - RR42_RS13395 0.54 +1.2 2,890,813 + RR42_RS13395 0.60 +0.4 2,890,822 + RR42_RS13395 0.62 +0.5 2,890,822 + RR42_RS13395 0.62 -0.1 2,890,909 + RR42_RS13395 0.72 +0.9 2,890,910 - RR42_RS13395 0.72 +1.1 2,891,190 - -0.3 2,891,261 - -1.3 2,891,501 - +0.2 2,891,501 - -1.4 2,891,524 - -0.6 2,891,548 + -0.6 2,891,549 - +0.1 2,891,549 - -1.4 2,891,734 + RR42_RS13405 0.15 -0.1 2,891,741 + RR42_RS13405 0.15 -0.1 2,891,742 - RR42_RS13405 0.15 +0.3 2,891,954 + RR42_RS13405 0.33 -0.4 2,891,955 - RR42_RS13405 0.33 +0.9 2,891,955 - RR42_RS13405 0.33 +0.7 2,891,955 - RR42_RS13405 0.33 -0.5 2,892,059 + RR42_RS13405 0.41 +0.4 2,892,095 + RR42_RS13405 0.44 +0.4 2,892,095 + RR42_RS13405 0.44 -0.8 2,892,095 + RR42_RS13405 0.44 +0.4 2,892,096 - RR42_RS13405 0.44 -1.5
Or see this region's nucleotide sequence