Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS12760

Experiment: R2A with Paraquat dichloride 0.064 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Paraquat dichloride 0.064 mg/ml
2,738,591	+		RR42_RS12750	0.74	+0.3
2,738,591	+		RR42_RS12750	0.74	+2.8
2,738,592	-		RR42_RS12750	0.75	+0.6
2,738,597	+		RR42_RS12750	0.76	-1.7
2,738,598	-		RR42_RS12750	0.76	+0.6
2,738,598	-		RR42_RS12750	0.76	+0.3
2,738,697	+				+0.2
2,738,698	-				-0.4
2,738,780	-				-0.3
2,739,153	+				-0.1
2,739,154	-				-1.4
2,739,173	+				-0.3
2,739,173	+				-0.9
2,739,223	-				-0.8
2,739,223	-				+0.7
2,739,307	-				+0.4
2,739,380	-				+0.3
2,739,427	+				+0.5
2,739,427	+				+1.2
2,739,595	+				+0.1
2,739,596	-				-0.6
2,739,596	-				-0.9
2,739,596	-				+0.6
2,739,596	-				+1.4
2,739,770	+		RR42_RS12760	0.11	+0.1
2,739,770	+		RR42_RS12760	0.11	-0.4
2,739,771	-		RR42_RS12760	0.11	-2.2
2,739,942	-		RR42_RS12760	0.19	+0.2
2,740,053	+		RR42_RS12760	0.25	+0.0
2,740,091	-		RR42_RS12760	0.26	+0.0
2,740,099	-		RR42_RS12760	0.27	-0.1
2,740,108	+		RR42_RS12760	0.27	-0.8
2,740,108	+		RR42_RS12760	0.27	-0.7
2,740,246	-		RR42_RS12760	0.34	+0.2
2,740,252	+		RR42_RS12760	0.34	+0.2
2,740,347	+		RR42_RS12760	0.39	-1.3
2,740,568	+		RR42_RS12760	0.50	-1.3
2,741,025	-		RR42_RS12760	0.72	+0.1
2,741,025	-		RR42_RS12760	0.72	-2.5
2,741,150	+		RR42_RS12760	0.78	-1.4
2,741,187	-		RR42_RS12760	0.80	-1.1
2,741,217	-		RR42_RS12760	0.81	+0.9
2,741,217	-		RR42_RS12760	0.81	-0.7
2,741,247	-		RR42_RS12760	0.83	+1.1
2,741,247	-		RR42_RS12760	0.83	+0.0
2,741,354	+		RR42_RS12760	0.88	-0.6
2,741,417	+				+0.3
2,741,418	-				+0.3
2,741,418	-				-1.5
2,741,510	+				-0.3
2,741,510	+				-0.8
2,741,510	+				+0.0
2,741,510	+				-0.0
2,741,511	-				+0.2
2,741,511	-				-0.9
2,741,594	+				+0.1
2,741,633	+				+0.5
2,741,634	-				+1.6
2,741,715	+				+0.0
2,741,715	+				+0.2
2,741,716	-				+1.2
2,741,847	+		RR42_RS12765	0.11	+0.2
2,741,893	+		RR42_RS12765	0.13	-0.8
2,741,893	+		RR42_RS12765	0.13	-2.0
2,741,893	+		RR42_RS12765	0.13	+0.0
2,741,894	-		RR42_RS12765	0.13	+0.6
2,741,919	+		RR42_RS12765	0.15	-0.8
2,741,919	+		RR42_RS12765	0.15	-0.1
2,741,919	+		RR42_RS12765	0.15	+0.5
2,741,920	-		RR42_RS12765	0.15	-0.8
2,741,920	-		RR42_RS12765	0.15	-1.2
2,741,923	-		RR42_RS12765	0.15	+0.0
2,741,931	+		RR42_RS12765	0.15	-0.3
2,741,937	+		RR42_RS12765	0.15	+0.9
2,741,937	+		RR42_RS12765	0.15	+0.2
2,741,938	-		RR42_RS12765	0.16	-0.6
2,741,938	-		RR42_RS12765	0.16	+0.3
2,741,938	-		RR42_RS12765	0.16	+0.9
2,741,947	-		RR42_RS12765	0.16	-0.4
2,741,963	-		RR42_RS12765	0.17	+0.6
2,742,189	+		RR42_RS12765	0.28	+0.4
2,742,189	+		RR42_RS12765	0.28	+0.1
2,742,190	-		RR42_RS12765	0.28	+0.2
2,742,378	-		RR42_RS12765	0.37	-0.5
2,742,447	+		RR42_RS12765	0.40	+0.2
2,742,447	+		RR42_RS12765	0.40	-1.0
2,742,448	-		RR42_RS12765	0.40	-0.8
2,742,562	+		RR42_RS12765	0.45	-1.3