Experiment: R2A with Paraquat dichloride 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS12610 and RR42_RS12615 are separated by 227 nucleotides RR42_RS12615 and RR42_RS12620 are separated by 382 nucleotides RR42_RS12620 and RR42_RS12625 are separated by 319 nucleotides
RR42_RS12610: RR42_RS12610 - glutaminase, at 2,707,818 to 2,708,816
_RS12610
RR42_RS12615: RR42_RS12615 - LexA family transcriptional regulator, at 2,709,044 to 2,709,700
_RS12615
RR42_RS12620: RR42_RS12620 - tRNA-His, at 2,710,083 to 2,710,158
_RS12620
RR42_RS12625: RR42_RS12625 - hypothetical protein, at 2,710,478 to 2,711,002
_RS12625
Position (kb)
2709
2710 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2708.152 kb on + strand, within RR42_RS12610 at 2708.152 kb on + strand, within RR42_RS12610 at 2708.152 kb on + strand, within RR42_RS12610 at 2708.543 kb on + strand, within RR42_RS12610 at 2708.544 kb on - strand, within RR42_RS12610 at 2708.633 kb on + strand, within RR42_RS12610 at 2708.634 kb on - strand, within RR42_RS12610 at 2708.634 kb on - strand, within RR42_RS12610 at 2708.637 kb on + strand, within RR42_RS12610 at 2708.637 kb on + strand, within RR42_RS12610 at 2708.638 kb on - strand, within RR42_RS12610 at 2708.638 kb on - strand, within RR42_RS12610 at 2708.638 kb on - strand, within RR42_RS12610 at 2708.745 kb on - strand at 2708.745 kb on - strand at 2708.890 kb on - strand at 2708.890 kb on - strand at 2709.386 kb on + strand, within RR42_RS12615 at 2709.386 kb on + strand, within RR42_RS12615 at 2709.766 kb on - strand at 2709.778 kb on + strand at 2709.779 kb on - strand at 2709.804 kb on + strand at 2709.804 kb on + strand at 2709.805 kb on - strand at 2709.805 kb on - strand at 2709.887 kb on + strand at 2709.888 kb on - strand at 2709.931 kb on + strand at 2710.185 kb on + strand at 2710.229 kb on + strand at 2710.229 kb on + strand at 2710.230 kb on - strand at 2710.230 kb on - strand at 2710.240 kb on + strand at 2710.240 kb on + strand at 2710.257 kb on + strand at 2710.258 kb on - strand at 2710.375 kb on + strand at 2710.376 kb on - strand at 2710.441 kb on + strand at 2710.444 kb on + strand at 2710.445 kb on - strand at 2710.445 kb on - strand at 2710.445 kb on - strand at 2710.461 kb on - strand at 2710.486 kb on + strand at 2710.536 kb on + strand, within RR42_RS12625 at 2710.536 kb on + strand, within RR42_RS12625 at 2710.536 kb on + strand, within RR42_RS12625 at 2710.536 kb on + strand, within RR42_RS12625 at 2710.537 kb on - strand, within RR42_RS12625 at 2710.537 kb on - strand, within RR42_RS12625 at 2710.581 kb on - strand, within RR42_RS12625 at 2710.588 kb on + strand, within RR42_RS12625 at 2710.588 kb on + strand, within RR42_RS12625 at 2710.588 kb on + strand, within RR42_RS12625 at 2710.588 kb on + strand, within RR42_RS12625 at 2710.589 kb on - strand, within RR42_RS12625 at 2710.597 kb on - strand, within RR42_RS12625 at 2710.597 kb on - strand, within RR42_RS12625 at 2710.666 kb on - strand, within RR42_RS12625
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Paraquat dichloride 0.064 mg/ml remove 2,708,152 + RR42_RS12610 0.33 -0.2 2,708,152 + RR42_RS12610 0.33 -0.2 2,708,152 + RR42_RS12610 0.33 +0.2 2,708,543 + RR42_RS12610 0.73 -1.3 2,708,544 - RR42_RS12610 0.73 -1.2 2,708,633 + RR42_RS12610 0.82 +1.6 2,708,634 - RR42_RS12610 0.82 -0.8 2,708,634 - RR42_RS12610 0.82 -0.6 2,708,637 + RR42_RS12610 0.82 -0.2 2,708,637 + RR42_RS12610 0.82 +1.5 2,708,638 - RR42_RS12610 0.82 +0.5 2,708,638 - RR42_RS12610 0.82 -1.2 2,708,638 - RR42_RS12610 0.82 +0.9 2,708,745 - +0.5 2,708,745 - -1.3 2,708,890 - +0.7 2,708,890 - +1.0 2,709,386 + RR42_RS12615 0.52 +0.2 2,709,386 + RR42_RS12615 0.52 +1.2 2,709,766 - -0.2 2,709,778 + +1.2 2,709,779 - -1.7 2,709,804 + -1.4 2,709,804 + -0.3 2,709,805 - -0.2 2,709,805 - +2.2 2,709,887 + +0.7 2,709,888 - +1.2 2,709,931 + -2.0 2,710,185 + -0.0 2,710,229 + -0.5 2,710,229 + -1.2 2,710,230 - +1.3 2,710,230 - +0.2 2,710,240 + +0.2 2,710,240 + +0.0 2,710,257 + +0.6 2,710,258 - -0.5 2,710,375 + -0.3 2,710,376 - -0.6 2,710,441 + +0.6 2,710,444 + -0.4 2,710,445 - +0.2 2,710,445 - +0.7 2,710,445 - -0.7 2,710,461 - -1.7 2,710,486 + +0.7 2,710,536 + RR42_RS12625 0.11 -0.4 2,710,536 + RR42_RS12625 0.11 +0.3 2,710,536 + RR42_RS12625 0.11 -0.3 2,710,536 + RR42_RS12625 0.11 +0.6 2,710,537 - RR42_RS12625 0.11 +0.4 2,710,537 - RR42_RS12625 0.11 -0.3 2,710,581 - RR42_RS12625 0.20 +0.2 2,710,588 + RR42_RS12625 0.21 -1.0 2,710,588 + RR42_RS12625 0.21 -0.4 2,710,588 + RR42_RS12625 0.21 +0.2 2,710,588 + RR42_RS12625 0.21 +0.0 2,710,589 - RR42_RS12625 0.21 +0.2 2,710,597 - RR42_RS12625 0.23 +0.2 2,710,597 - RR42_RS12625 0.23 +1.0 2,710,666 - RR42_RS12625 0.36 -1.1
Or see this region's nucleotide sequence