Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS12495

Experiment: R2A with Paraquat dichloride 0.064 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Paraquat dichloride 0.064 mg/ml
2,686,537	+				-1.3
2,686,537	+				-0.4
2,686,989	+		RR42_RS12490	0.64	+1.0
2,686,989	+		RR42_RS12490	0.64	+0.1
2,686,990	-		RR42_RS12490	0.64	-0.5
2,687,134	+		RR42_RS12490	0.82	+0.4
2,687,135	-		RR42_RS12490	0.82	-0.5
2,687,135	-		RR42_RS12490	0.82	+1.0
2,687,135	-		RR42_RS12490	0.82	-1.1
2,687,301	-				+0.6
2,687,301	-				+0.3
2,687,301	-				+0.9
2,687,433	+				+1.6
2,687,433	+				+0.4
2,687,434	-				+3.7
2,687,634	+		RR42_RS12495	0.26	+0.6
2,687,634	+		RR42_RS12495	0.26	+1.1
2,687,685	+		RR42_RS12495	0.30	+0.1
2,687,686	-		RR42_RS12495	0.30	+0.2
2,687,691	+		RR42_RS12495	0.31	-1.3
2,687,692	-		RR42_RS12495	0.31	-0.5
2,687,692	-		RR42_RS12495	0.31	-0.8
2,687,692	-		RR42_RS12495	0.31	+0.6
2,687,692	-		RR42_RS12495	0.31	+0.7
2,687,724	+		RR42_RS12495	0.34	-2.3
2,687,775	+		RR42_RS12495	0.38	-0.0
2,687,922	+		RR42_RS12495	0.50	-1.7
2,687,922	+		RR42_RS12495	0.50	-0.8
2,687,922	+		RR42_RS12495	0.50	-0.1
2,687,923	-		RR42_RS12495	0.50	+1.2
2,687,994	+		RR42_RS12495	0.56	-1.3
2,687,994	+		RR42_RS12495	0.56	+0.3
2,688,093	+		RR42_RS12495	0.65	+1.7
2,688,093	+		RR42_RS12495	0.65	+1.2
2,688,094	-		RR42_RS12495	0.65	+0.5
2,688,094	-		RR42_RS12495	0.65	+2.7
2,688,241	-		RR42_RS12495	0.77	+0.6
2,688,345	+		RR42_RS12495	0.86	-0.5
2,688,414	+				+0.1
2,688,415	-				-0.4
2,688,415	-				-0.6
2,688,626	-				-2.1
2,688,626	-				-1.7
2,688,626	-				+1.4
2,688,991	+		RR42_RS12500	0.47	-0.3
2,688,991	+		RR42_RS12500	0.47	+0.8
2,688,991	+		RR42_RS12500	0.47	-0.1
2,688,992	-		RR42_RS12500	0.47	-0.0
2,688,992	-		RR42_RS12500	0.47	-0.2
2,688,994	+		RR42_RS12500	0.47	-0.5
2,688,994	+		RR42_RS12500	0.47	-0.8
2,688,995	-		RR42_RS12500	0.48	-0.5
2,689,441	+				+0.6
2,689,486	-		RR42_RS12505	0.14	-0.6