Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS11935

Experiment: R2A with Paraquat dichloride 0.064 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS11930 and RR42_RS11935 are separated by 94 nucleotidesRR42_RS11935 and RR42_RS11940 are separated by 142 nucleotidesRR42_RS11940 and RR42_RS11945 are separated by 50 nucleotides RR42_RS11930: RR42_RS11930 - succinyldiaminopimelate aminotransferase, at 2,557,036 to 2,558,253 _RS11930 RR42_RS11935: RR42_RS11935 - 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase, at 2,558,348 to 2,559,175 _RS11935 RR42_RS11940: RR42_RS11940 - membrane protein, at 2,559,318 to 2,559,725 _RS11940 RR42_RS11945: RR42_RS11945 - ArsC family transcriptional regulator, at 2,559,776 to 2,560,123 _RS11945 Position (kb) 2558 2559 2560Strain fitness (log2 ratio) -2 -1 0 1at 2557.423 kb on + strand, within RR42_RS11930at 2557.669 kb on + strand, within RR42_RS11930at 2557.669 kb on + strand, within RR42_RS11930at 2557.853 kb on + strand, within RR42_RS11930at 2557.853 kb on + strand, within RR42_RS11930at 2557.860 kb on + strand, within RR42_RS11930at 2557.860 kb on + strand, within RR42_RS11930at 2557.860 kb on + strand, within RR42_RS11930at 2557.864 kb on + strand, within RR42_RS11930at 2557.864 kb on + strand, within RR42_RS11930at 2557.864 kb on + strand, within RR42_RS11930at 2558.307 kb on + strandat 2558.317 kb on + strandat 2558.317 kb on + strandat 2559.769 kb on + strandat 2559.791 kb on + strandat 2559.792 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Paraquat dichloride 0.064 mg/ml
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2,557,423 + RR42_RS11930 0.32 -1.6
2,557,669 + RR42_RS11930 0.52 -0.5
2,557,669 + RR42_RS11930 0.52 +0.3
2,557,853 + RR42_RS11930 0.67 -2.4
2,557,853 + RR42_RS11930 0.67 -0.4
2,557,860 + RR42_RS11930 0.68 -0.5
2,557,860 + RR42_RS11930 0.68 -0.1
2,557,860 + RR42_RS11930 0.68 +0.2
2,557,864 + RR42_RS11930 0.68 -1.2
2,557,864 + RR42_RS11930 0.68 -1.2
2,557,864 + RR42_RS11930 0.68 -0.0
2,558,307 + -0.7
2,558,317 + -0.3
2,558,317 + +0.1
2,559,769 + -1.1
2,559,791 + -0.7
2,559,792 - -1.2

Or see this region's nucleotide sequence