Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS11835

Experiment: R2A with Paraquat dichloride 0.064 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS11825 and RR42_RS11830 are separated by 34 nucleotidesRR42_RS11830 and RR42_RS11835 are separated by 36 nucleotidesRR42_RS11835 and RR42_RS11840 are separated by 123 nucleotides RR42_RS11825: RR42_RS11825 - UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase, at 2,527,497 to 2,528,603 _RS11825 RR42_RS11830: RR42_RS11830 - outer membrane protein OmpH, at 2,528,638 to 2,529,165 _RS11830 RR42_RS11835: RR42_RS11835 - membrane protein, at 2,529,202 to 2,531,511 _RS11835 RR42_RS11840: RR42_RS11840 - zinc metalloprotease, at 2,531,635 to 2,533,026 _RS11840 Position (kb) 2529 2530 2531 2532Strain fitness (log2 ratio) -1 0 1at 2528.640 kb on - strandat 2529.194 kb on - strandat 2529.194 kb on - strandat 2531.778 kb on - strand, within RR42_RS11840at 2531.812 kb on - strand, within RR42_RS11840

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Paraquat dichloride 0.064 mg/ml
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2,528,640 - -0.5
2,529,194 - -0.3
2,529,194 - -0.4
2,531,778 - RR42_RS11840 0.10 -1.0
2,531,812 - RR42_RS11840 0.13 -0.5

Or see this region's nucleotide sequence