Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS11325

Experiment: R2A with Paraquat dichloride 0.064 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Paraquat dichloride 0.064 mg/ml
2,420,701	+				-0.1
2,420,701	+				+0.3
2,420,707	+				-1.5
2,420,708	-				+0.7
2,420,851	+		RR42_RS11320	0.19	+0.4
2,420,851	+		RR42_RS11320	0.19	-0.6
2,420,851	+		RR42_RS11320	0.19	+0.3
2,420,851	+		RR42_RS11320	0.19	+0.4
2,420,852	-		RR42_RS11320	0.20	-0.3
2,420,891	-		RR42_RS11320	0.25	-1.5
2,420,954	-		RR42_RS11320	0.34	-0.1
2,421,504	+				+0.0
2,421,505	-				-0.9
2,421,505	-				-0.3
2,421,505	-				-0.3
2,421,505	-				+0.6
2,421,615	+				-0.8
2,421,615	+				-2.0
2,421,615	+				-1.3
2,421,699	+		RR42_RS11325	0.11	-0.5
2,421,699	+		RR42_RS11325	0.11	+0.1
2,421,699	+		RR42_RS11325	0.11	-1.2
2,421,699	+		RR42_RS11325	0.11	-2.0
2,421,700	-		RR42_RS11325	0.11	-0.7
2,421,747	+		RR42_RS11325	0.13	+0.4
2,421,747	+		RR42_RS11325	0.13	+0.2
2,421,748	-		RR42_RS11325	0.13	-0.1
2,421,748	-		RR42_RS11325	0.13	-0.6
2,421,748	-		RR42_RS11325	0.13	+0.6
2,421,829	-		RR42_RS11325	0.17	-1.2
2,421,953	+		RR42_RS11325	0.22	+0.6
2,421,953	+		RR42_RS11325	0.22	+0.4
2,421,954	-		RR42_RS11325	0.22	+0.1
2,421,954	-		RR42_RS11325	0.22	-0.6
2,421,954	-		RR42_RS11325	0.22	-0.8
2,421,979	+		RR42_RS11325	0.23	-0.3
2,421,980	-		RR42_RS11325	0.23	-1.4
2,422,009	+		RR42_RS11325	0.24	-0.6
2,422,009	+		RR42_RS11325	0.24	-0.3
2,422,009	+		RR42_RS11325	0.24	-1.5
2,422,010	-		RR42_RS11325	0.24	+0.8
2,422,010	-		RR42_RS11325	0.24	-0.2
2,422,010	-		RR42_RS11325	0.24	+2.0
2,422,299	+		RR42_RS11325	0.36	-0.6
2,422,330	-		RR42_RS11325	0.37	-1.5
2,422,689	+		RR42_RS11325	0.51	-0.5
2,422,689	+		RR42_RS11325	0.51	-0.2
2,422,690	-		RR42_RS11325	0.51	-0.3
2,422,690	-		RR42_RS11325	0.51	-0.7
2,422,690	-		RR42_RS11325	0.51	-0.4
2,422,855	-		RR42_RS11325	0.58	+1.3
2,422,890	+		RR42_RS11325	0.60	-0.9
2,422,890	+		RR42_RS11325	0.60	-0.1
2,422,890	+		RR42_RS11325	0.60	-1.4
2,422,891	-		RR42_RS11325	0.60	-0.5
2,422,981	+		RR42_RS11325	0.63	-0.9
2,422,981	+		RR42_RS11325	0.63	-0.2
2,422,981	+		RR42_RS11325	0.63	-0.8
2,423,026	-		RR42_RS11325	0.65	+0.4
2,423,139	+		RR42_RS11325	0.70	-0.3
2,423,139	+		RR42_RS11325	0.70	-0.2
2,423,214	+		RR42_RS11325	0.73	+0.2
2,423,225	-		RR42_RS11325	0.73	-0.8
2,423,248	-		RR42_RS11325	0.74	+1.7
2,423,446	+		RR42_RS11325	0.82	-0.4
2,423,469	+		RR42_RS11325	0.83	+0.1
2,423,470	-		RR42_RS11325	0.83	+1.3
2,423,546	-		RR42_RS11325	0.86	+1.0
2,423,808	+				-1.3
2,423,808	+				-0.1
2,423,808	+				-0.4
2,423,809	-				+1.0
2,423,809	-				+0.9
2,423,809	-				-0.3
2,423,852	+				+2.4
2,423,924	+				+1.4
2,423,924	+				-0.6
2,423,924	+				+0.0
2,423,924	+				-0.4
2,423,924	+				+0.5
2,423,924	+				-0.0
2,423,925	-				+0.3
2,423,928	+				-0.5
2,424,157	-				+1.0
2,424,181	-				-2.0
2,424,343	-		RR42_RS11330	0.15	-0.6
2,424,387	+		RR42_RS11330	0.18	+0.0
2,424,419	-		RR42_RS11330	0.21	+0.6
2,424,436	+		RR42_RS11330	0.22	+0.1
2,424,436	+		RR42_RS11330	0.22	-0.8
2,424,556	+		RR42_RS11330	0.30	+0.1
2,424,558	+		RR42_RS11330	0.30	+1.0
2,424,559	-		RR42_RS11330	0.30	+0.3
2,424,559	-		RR42_RS11330	0.30	+1.9
2,424,559	-		RR42_RS11330	0.30	+0.4
2,424,639	+		RR42_RS11330	0.36	+0.7
2,424,639	+		RR42_RS11330	0.36	-0.5
2,424,640	-		RR42_RS11330	0.36	-0.4
2,424,710	-		RR42_RS11330	0.41	-0.9
2,424,758	-		RR42_RS11330	0.44	+1.2