Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS10440

Experiment: R2A with Paraquat dichloride 0.064 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS10435 and RR42_RS10440 are separated by 659 nucleotidesRR42_RS10440 and RR42_RS10445 are separated by 15 nucleotidesRR42_RS10445 and RR42_RS10450 are separated by 295 nucleotides RR42_RS10435: RR42_RS10435 - hypothetical protein, at 2,232,169 to 2,232,552 _RS10435 RR42_RS10440: RR42_RS10440 - heat-shock protein, at 2,233,212 to 2,233,619 _RS10440 RR42_RS10445: RR42_RS10445 - heat-shock protein Hsp20, at 2,233,635 to 2,234,075 _RS10445 RR42_RS10450: RR42_RS10450 - KfrA protein, at 2,234,371 to 2,235,438 _RS10450 Position (kb) 2233 2234Strain fitness (log2 ratio) -2 -1 0 1 2at 2232.218 kb on + strand, within RR42_RS10435at 2232.218 kb on + strand, within RR42_RS10435at 2232.235 kb on - strand, within RR42_RS10435at 2232.235 kb on - strand, within RR42_RS10435at 2232.235 kb on - strand, within RR42_RS10435at 2232.235 kb on - strand, within RR42_RS10435at 2232.268 kb on + strand, within RR42_RS10435at 2232.268 kb on + strand, within RR42_RS10435at 2232.269 kb on - strand, within RR42_RS10435at 2232.357 kb on + strand, within RR42_RS10435at 2232.374 kb on + strand, within RR42_RS10435at 2232.374 kb on + strand, within RR42_RS10435at 2232.374 kb on + strand, within RR42_RS10435at 2232.375 kb on - strand, within RR42_RS10435at 2232.572 kb on + strandat 2232.573 kb on - strandat 2232.573 kb on - strandat 2232.573 kb on - strandat 2232.667 kb on - strandat 2232.789 kb on + strandat 2232.793 kb on + strandat 2232.793 kb on + strandat 2232.793 kb on + strandat 2232.793 kb on + strandat 2232.794 kb on - strandat 2232.794 kb on - strandat 2233.011 kb on + strandat 2233.093 kb on + strandat 2233.123 kb on + strandat 2233.313 kb on + strand, within RR42_RS10440at 2233.313 kb on + strand, within RR42_RS10440at 2233.313 kb on + strand, within RR42_RS10440at 2233.719 kb on + strand, within RR42_RS10445at 2233.719 kb on + strand, within RR42_RS10445at 2233.793 kb on - strand, within RR42_RS10445at 2233.872 kb on + strand, within RR42_RS10445at 2233.873 kb on - strand, within RR42_RS10445at 2234.081 kb on + strandat 2234.082 kb on - strandat 2234.200 kb on + strandat 2234.206 kb on - strandat 2234.274 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Paraquat dichloride 0.064 mg/ml
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2,232,218 + RR42_RS10435 0.13 -1.1
2,232,218 + RR42_RS10435 0.13 +0.5
2,232,235 - RR42_RS10435 0.17 +0.6
2,232,235 - RR42_RS10435 0.17 +1.5
2,232,235 - RR42_RS10435 0.17 -1.7
2,232,235 - RR42_RS10435 0.17 +1.7
2,232,268 + RR42_RS10435 0.26 +0.0
2,232,268 + RR42_RS10435 0.26 -0.1
2,232,269 - RR42_RS10435 0.26 +0.3
2,232,357 + RR42_RS10435 0.49 -0.7
2,232,374 + RR42_RS10435 0.53 +0.6
2,232,374 + RR42_RS10435 0.53 +0.7
2,232,374 + RR42_RS10435 0.53 +0.9
2,232,375 - RR42_RS10435 0.54 +0.3
2,232,572 + +0.4
2,232,573 - -0.1
2,232,573 - -1.8
2,232,573 - +0.3
2,232,667 - +0.7
2,232,789 + -0.5
2,232,793 + +0.7
2,232,793 + -0.1
2,232,793 + +0.1
2,232,793 + -1.2
2,232,794 - +0.8
2,232,794 - -1.5
2,233,011 + +0.6
2,233,093 + -2.2
2,233,123 + +1.9
2,233,313 + RR42_RS10440 0.25 +0.2
2,233,313 + RR42_RS10440 0.25 +0.5
2,233,313 + RR42_RS10440 0.25 +1.1
2,233,719 + RR42_RS10445 0.19 -0.8
2,233,719 + RR42_RS10445 0.19 -0.3
2,233,793 - RR42_RS10445 0.36 +2.1
2,233,872 + RR42_RS10445 0.54 -1.5
2,233,873 - RR42_RS10445 0.54 -0.6
2,234,081 + -0.2
2,234,082 - -2.0
2,234,200 + -0.7
2,234,206 - +1.9
2,234,274 + -0.9

Or see this region's nucleotide sequence