Experiment: R2A with Paraquat dichloride 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS10435 and RR42_RS10440 are separated by 659 nucleotides RR42_RS10440 and RR42_RS10445 are separated by 15 nucleotides RR42_RS10445 and RR42_RS10450 are separated by 295 nucleotides
RR42_RS10435: RR42_RS10435 - hypothetical protein, at 2,232,169 to 2,232,552
_RS10435
RR42_RS10440: RR42_RS10440 - heat-shock protein, at 2,233,212 to 2,233,619
_RS10440
RR42_RS10445: RR42_RS10445 - heat-shock protein Hsp20, at 2,233,635 to 2,234,075
_RS10445
RR42_RS10450: RR42_RS10450 - KfrA protein, at 2,234,371 to 2,235,438
_RS10450
Position (kb)
2233
2234 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2232.218 kb on + strand, within RR42_RS10435 at 2232.218 kb on + strand, within RR42_RS10435 at 2232.235 kb on - strand, within RR42_RS10435 at 2232.235 kb on - strand, within RR42_RS10435 at 2232.235 kb on - strand, within RR42_RS10435 at 2232.235 kb on - strand, within RR42_RS10435 at 2232.268 kb on + strand, within RR42_RS10435 at 2232.268 kb on + strand, within RR42_RS10435 at 2232.269 kb on - strand, within RR42_RS10435 at 2232.357 kb on + strand, within RR42_RS10435 at 2232.374 kb on + strand, within RR42_RS10435 at 2232.374 kb on + strand, within RR42_RS10435 at 2232.374 kb on + strand, within RR42_RS10435 at 2232.375 kb on - strand, within RR42_RS10435 at 2232.572 kb on + strand at 2232.573 kb on - strand at 2232.573 kb on - strand at 2232.573 kb on - strand at 2232.667 kb on - strand at 2232.789 kb on + strand at 2232.793 kb on + strand at 2232.793 kb on + strand at 2232.793 kb on + strand at 2232.793 kb on + strand at 2232.794 kb on - strand at 2232.794 kb on - strand at 2233.011 kb on + strand at 2233.093 kb on + strand at 2233.123 kb on + strand at 2233.313 kb on + strand, within RR42_RS10440 at 2233.313 kb on + strand, within RR42_RS10440 at 2233.313 kb on + strand, within RR42_RS10440 at 2233.719 kb on + strand, within RR42_RS10445 at 2233.719 kb on + strand, within RR42_RS10445 at 2233.793 kb on - strand, within RR42_RS10445 at 2233.872 kb on + strand, within RR42_RS10445 at 2233.873 kb on - strand, within RR42_RS10445 at 2234.081 kb on + strand at 2234.082 kb on - strand at 2234.200 kb on + strand at 2234.206 kb on - strand at 2234.274 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Paraquat dichloride 0.064 mg/ml remove 2,232,218 + RR42_RS10435 0.13 -1.1 2,232,218 + RR42_RS10435 0.13 +0.5 2,232,235 - RR42_RS10435 0.17 +0.6 2,232,235 - RR42_RS10435 0.17 +1.5 2,232,235 - RR42_RS10435 0.17 -1.7 2,232,235 - RR42_RS10435 0.17 +1.7 2,232,268 + RR42_RS10435 0.26 +0.0 2,232,268 + RR42_RS10435 0.26 -0.1 2,232,269 - RR42_RS10435 0.26 +0.3 2,232,357 + RR42_RS10435 0.49 -0.7 2,232,374 + RR42_RS10435 0.53 +0.6 2,232,374 + RR42_RS10435 0.53 +0.7 2,232,374 + RR42_RS10435 0.53 +0.9 2,232,375 - RR42_RS10435 0.54 +0.3 2,232,572 + +0.4 2,232,573 - -0.1 2,232,573 - -1.8 2,232,573 - +0.3 2,232,667 - +0.7 2,232,789 + -0.5 2,232,793 + +0.7 2,232,793 + -0.1 2,232,793 + +0.1 2,232,793 + -1.2 2,232,794 - +0.8 2,232,794 - -1.5 2,233,011 + +0.6 2,233,093 + -2.2 2,233,123 + +1.9 2,233,313 + RR42_RS10440 0.25 +0.2 2,233,313 + RR42_RS10440 0.25 +0.5 2,233,313 + RR42_RS10440 0.25 +1.1 2,233,719 + RR42_RS10445 0.19 -0.8 2,233,719 + RR42_RS10445 0.19 -0.3 2,233,793 - RR42_RS10445 0.36 +2.1 2,233,872 + RR42_RS10445 0.54 -1.5 2,233,873 - RR42_RS10445 0.54 -0.6 2,234,081 + -0.2 2,234,082 - -2.0 2,234,200 + -0.7 2,234,206 - +1.9 2,234,274 + -0.9
Or see this region's nucleotide sequence