Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS09815

Experiment: R2A with Paraquat dichloride 0.064 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Paraquat dichloride 0.064 mg/ml
2,088,767	+				-0.9
2,088,768	-				-0.1
2,088,768	-				-0.5
2,088,793	+				+1.0
2,088,793	+				-0.9
2,088,801	+				+0.0
2,088,801	+				+0.4
2,088,828	-				+0.2
2,088,828	-				-0.1
2,088,867	+				-0.4
2,088,867	+				-0.6
2,088,868	-				-0.9
2,088,868	-				-1.1
2,088,868	-				+1.7
2,088,868	-				+0.3
2,088,868	-				-2.7
2,088,868	-				-0.6
2,088,868	-				+0.3
2,088,922	-		RR42_RS09805	0.19	+0.2
2,089,086	-		RR42_RS09805	0.73	-0.6
2,089,086	-		RR42_RS09805	0.73	+0.9
2,089,087	+		RR42_RS09805	0.74	-1.6
2,089,087	+		RR42_RS09805	0.74	-0.5
2,089,087	+		RR42_RS09805	0.74	+1.2
2,089,087	+		RR42_RS09805	0.74	-0.7
2,089,087	+		RR42_RS09805	0.74	-1.0
2,089,088	-		RR42_RS09805	0.74	+0.9
2,089,088	-		RR42_RS09805	0.74	+0.5
2,089,088	-		RR42_RS09805	0.74	-0.9
2,089,088	-		RR42_RS09805	0.74	-0.5
2,089,088	-		RR42_RS09805	0.74	-0.0
2,089,088	-		RR42_RS09805	0.74	-0.1
2,089,088	-		RR42_RS09805	0.74	-0.0
2,089,124	-		RR42_RS09805	0.86	-0.7
2,089,124	-		RR42_RS09805	0.86	-1.3
2,089,124	-		RR42_RS09805	0.86	+0.2
2,089,124	-		RR42_RS09805	0.86	+0.4
2,089,124	-		RR42_RS09805	0.86	-1.8
2,089,170	-				+0.4
2,089,183	+				-1.3
2,089,183	+				-0.5
2,089,184	-				+0.7
2,089,184	-				+0.2
2,089,230	-				+0.9
2,089,256	+				+1.3
2,089,257	-				-0.3
2,089,257	-				-0.8
2,089,290	+		RR42_RS09810	0.12	+0.2
2,089,290	+		RR42_RS09810	0.12	-0.0
2,089,290	+		RR42_RS09810	0.12	-1.3
2,089,290	+		RR42_RS09810	0.12	+1.2
2,089,291	-		RR42_RS09810	0.13	-1.0
2,089,291	-		RR42_RS09810	0.13	-1.4
2,089,310	-		RR42_RS09810	0.19	+0.9
2,089,477	+		RR42_RS09810	0.78	-0.1
2,089,478	-		RR42_RS09810	0.78	+1.2
2,089,478	-		RR42_RS09810	0.78	+2.5
2,089,581	+				+0.4
2,089,638	+				+0.5
2,089,638	+				-0.1
2,089,639	-				-0.3
2,089,731	-				-0.0
2,089,970	+				+1.6
2,089,971	-				-0.5
2,089,994	+		RR42_RS09815	0.10	-0.3
2,090,627	+		RR42_RS09815	0.34	-0.6
2,090,628	-		RR42_RS09815	0.34	-1.2
2,090,682	-		RR42_RS09815	0.36	-0.1
2,090,872	-		RR42_RS09815	0.43	+0.9
2,091,093	-		RR42_RS09815	0.52	-0.4
2,091,107	+		RR42_RS09815	0.52	+0.4
2,091,108	-		RR42_RS09815	0.52	+1.2
2,091,112	-		RR42_RS09815	0.52	-0.0
2,091,249	+		RR42_RS09815	0.58	+0.9
2,091,249	+		RR42_RS09815	0.58	-0.1
2,091,249	+		RR42_RS09815	0.58	+0.2
2,091,249	+		RR42_RS09815	0.58	-1.0
2,091,250	-		RR42_RS09815	0.58	-0.2
2,091,282	+		RR42_RS09815	0.59	-2.0
2,091,282	+		RR42_RS09815	0.59	+0.2
2,091,283	-		RR42_RS09815	0.59	-0.1
2,091,283	-		RR42_RS09815	0.59	-1.8
2,091,283	-		RR42_RS09815	0.59	+0.3
2,091,283	-		RR42_RS09815	0.59	-0.2
2,091,371	+		RR42_RS09815	0.62	-0.7
2,091,372	-		RR42_RS09815	0.62	-0.7
2,091,372	-		RR42_RS09815	0.62	+0.3
2,091,440	+		RR42_RS09815	0.65	-0.1
2,091,441	-		RR42_RS09815	0.65	+0.3
2,091,444	-		RR42_RS09815	0.65	-0.9
2,091,444	-		RR42_RS09815	0.65	-0.1
2,091,444	-		RR42_RS09815	0.65	-0.1
2,091,444	-		RR42_RS09815	0.65	+0.8
2,091,444	-		RR42_RS09815	0.65	+0.3
2,091,500	+		RR42_RS09815	0.67	+1.3
2,091,571	-		RR42_RS09815	0.70	-1.4
2,091,571	-		RR42_RS09815	0.70	+0.5
2,091,627	+		RR42_RS09815	0.72	-0.8
2,091,627	+		RR42_RS09815	0.72	+0.1
2,091,656	+		RR42_RS09815	0.73	-0.8
2,091,657	-		RR42_RS09815	0.73	+0.3
2,092,007	+		RR42_RS09815	0.86	+0.4
2,092,007	+		RR42_RS09815	0.86	-1.0
2,092,007	+		RR42_RS09815	0.86	-0.0
2,092,057	+		RR42_RS09815	0.88	-1.4
2,092,057	+		RR42_RS09815	0.88	+1.3
2,092,058	-		RR42_RS09815	0.88	-0.1
2,092,058	-		RR42_RS09815	0.88	-0.2
2,092,172	+				-2.1
2,092,203	+				+1.1
2,092,203	+				-0.4
2,092,346	+				+0.4
2,092,451	+				-0.2
2,092,451	+				-0.2
2,092,451	+				+0.0
2,092,451	+				-1.2
2,092,451	+				+0.3
2,092,451	+				-0.8
2,092,452	-				-0.9
2,092,452	-				+1.5
2,092,452	-				+0.9
2,092,452	-				-1.0
2,092,452	-				+0.0
2,092,452	-				+0.2
2,092,452	-				-1.7
2,092,452	-				-1.0
2,092,456	+				+0.4
2,092,457	-				-0.6
2,092,457	-				-0.2
2,092,457	-				+0.2
2,092,578	-				-0.3
2,092,578	-				-0.9
2,092,578	-				-1.1
2,092,587	+				+0.9
2,092,587	+				+1.2
2,092,590	-				-0.1
2,092,641	-				+0.4
2,092,806	+				+0.3
2,092,807	-				-0.4
2,092,810	+				+1.3
2,092,810	+				+0.7
2,092,811	-				-0.7
2,092,811	-				+0.3
2,092,902	+				-1.0
2,092,902	+				-1.6
2,092,978	+				-2.0
2,092,978	+				-1.1
2,092,979	-				-0.5
2,092,982	+				-0.3
2,092,982	+				-0.0
2,092,982	+				-0.2
2,092,983	-				-0.1
2,092,983	-				+1.9
2,093,016	+				-0.8
2,093,017	-				-1.9
2,093,017	-				+1.3
2,093,036	+				+0.8
2,093,037	-				+0.8
2,093,285	-		RR42_RS09820	0.40	-1.8
2,093,303	+		RR42_RS09820	0.43	-1.1
2,093,303	+		RR42_RS09820	0.43	-0.6
2,093,303	+		RR42_RS09820	0.43	-0.6
2,093,304	-		RR42_RS09820	0.44	+0.6