Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS07875

Experiment: R2A with Paraquat dichloride 0.064 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Paraquat dichloride 0.064 mg/ml
1,688,041	+				+0.3
1,688,041	+				-0.7
1,688,042	-				-0.4
1,688,109	-		RR42_RS07870	0.13	-1.7
1,688,196	-		RR42_RS07870	0.28	-1.1
1,688,196	-		RR42_RS07870	0.28	+0.3
1,688,449	+		RR42_RS07870	0.74	-0.6
1,688,449	+		RR42_RS07870	0.74	-1.0
1,688,449	+		RR42_RS07870	0.74	+2.1
1,688,449	+		RR42_RS07870	0.74	+1.3
1,688,450	-		RR42_RS07870	0.75	+0.3
1,688,450	-		RR42_RS07870	0.75	+0.1
1,688,450	-		RR42_RS07870	0.75	+1.3
1,688,588	+				-0.5
1,688,588	+				-1.2
1,688,588	+				-1.9
1,688,711	+				-0.4
1,688,718	+				-1.0
1,688,861	-				-1.4
1,688,916	+				+1.3
1,688,916	+				-0.4
1,688,916	+				+1.7
1,688,916	+				-0.7
1,688,916	+				+1.3
1,688,916	+				-1.9
1,688,916	+				-2.0
1,688,916	+				+0.9
1,688,916	+				+0.4
1,688,916	+				-0.3
1,688,917	-				+0.1
1,688,917	-				-0.5
1,689,079	+		RR42_RS07875	0.15	+0.7
1,689,081	+		RR42_RS07875	0.15	+1.2
1,689,081	+		RR42_RS07875	0.15	+0.7
1,689,081	+		RR42_RS07875	0.15	+0.0
1,689,082	-		RR42_RS07875	0.15	-0.5
1,689,082	-		RR42_RS07875	0.15	+0.1
1,689,082	-		RR42_RS07875	0.15	-1.3
1,689,082	-		RR42_RS07875	0.15	-1.9
1,689,156	+		RR42_RS07875	0.21	-1.6
1,689,156	+		RR42_RS07875	0.21	-1.5
1,689,157	-		RR42_RS07875	0.21	-1.4
1,689,157	-		RR42_RS07875	0.21	+0.1
1,689,157	-		RR42_RS07875	0.21	-1.1
1,689,157	-		RR42_RS07875	0.21	-0.6
1,689,165	+		RR42_RS07875	0.21	-1.1
1,689,420	+		RR42_RS07875	0.41	-1.3
1,689,420	+		RR42_RS07875	0.41	-1.5
1,689,420	+		RR42_RS07875	0.41	-0.9
1,689,421	-		RR42_RS07875	0.41	+0.3
1,689,421	-		RR42_RS07875	0.41	+0.9
1,689,421	-		RR42_RS07875	0.41	+0.8
1,689,435	+		RR42_RS07875	0.42	+0.4
1,689,435	+		RR42_RS07875	0.42	+0.6
1,689,435	+		RR42_RS07875	0.42	-0.4
1,689,435	+		RR42_RS07875	0.42	+0.1
1,689,435	+		RR42_RS07875	0.42	+0.1
1,689,436	-		RR42_RS07875	0.42	+0.1
1,689,436	-		RR42_RS07875	0.42	-1.2
1,689,436	-		RR42_RS07875	0.42	-1.2
1,689,436	-		RR42_RS07875	0.42	+0.8
1,689,510	+		RR42_RS07875	0.48	-0.2
1,689,510	+		RR42_RS07875	0.48	-1.7
1,689,510	+		RR42_RS07875	0.48	-1.7
1,689,511	-		RR42_RS07875	0.48	-0.3
1,689,738	+		RR42_RS07875	0.65	+0.5
1,689,738	+		RR42_RS07875	0.65	+0.5
1,689,739	-		RR42_RS07875	0.65	+0.1
1,689,739	-		RR42_RS07875	0.65	-0.7
1,689,777	+		RR42_RS07875	0.68	-0.3
1,689,777	+		RR42_RS07875	0.68	-0.8
1,689,874	-		RR42_RS07875	0.76	-0.3
1,689,874	-		RR42_RS07875	0.76	+2.1
1,689,874	-		RR42_RS07875	0.76	-1.3
1,689,963	+		RR42_RS07875	0.83	+0.3
1,689,963	+		RR42_RS07875	0.83	+1.1
1,689,963	+		RR42_RS07875	0.83	+2.1
1,689,964	-		RR42_RS07875	0.83	-0.0
1,689,964	-		RR42_RS07875	0.83	+0.1
1,689,964	-		RR42_RS07875	0.83	+1.1
1,689,964	-		RR42_RS07875	0.83	-0.9
1,690,098	+				+1.7
1,690,099	-				-2.3
1,690,113	+				-0.7
1,690,113	+				+2.3
1,690,320	+				+0.7
1,690,320	+				+0.5
1,690,355	+				+0.9
1,690,355	+				-0.8
1,690,356	-				+0.3
1,690,434	-				+0.0
1,690,434	-				+0.6
1,690,439	+				-1.1
1,690,440	-				-0.7
1,690,442	+				-0.2
1,690,480	+				-0.5
1,690,480	+				-0.8
1,690,480	+				+0.1
1,690,480	+				+2.1
1,690,480	+				-0.6
1,690,480	+				-0.9
1,690,481	-				+0.1
1,690,481	-				-0.0
1,690,481	-				+0.3
1,690,481	-				+0.3
1,690,481	-				+0.8
1,690,481	-				-0.2
1,690,492	+				+0.3
1,690,492	+				-0.2
1,690,492	+				-2.2
1,690,493	-				-0.1
1,690,493	-				-1.7
1,690,493	-				+1.1
1,690,493	-				+0.8
1,690,504	+				-1.2
1,690,504	+				+1.7
1,690,518	+				-0.4
1,690,519	-				+0.1
1,690,519	-				-1.1