Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS07510

Experiment: R2A with Paraquat dichloride 0.064 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS07505 and RR42_RS07510 are separated by 62 nucleotidesRR42_RS07510 and RR42_RS07515 are separated by 100 nucleotides RR42_RS07505: RR42_RS07505 - benzoyl-CoA oxygenase, at 1,602,395 to 1,603,819 _RS07505 RR42_RS07510: RR42_RS07510 - benzoyl-CoA-dihydrodiol lyase, at 1,603,882 to 1,605,582 _RS07510 RR42_RS07515: RR42_RS07515 - transcriptional regulator, at 1,605,683 to 1,606,621 _RS07515 Position (kb) 1603 1604 1605 1606Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1602.885 kb on + strand, within RR42_RS07505at 1602.886 kb on - strand, within RR42_RS07505at 1602.957 kb on + strand, within RR42_RS07505at 1602.957 kb on + strand, within RR42_RS07505at 1602.958 kb on - strand, within RR42_RS07505at 1602.971 kb on - strand, within RR42_RS07505at 1603.046 kb on - strand, within RR42_RS07505at 1603.341 kb on + strand, within RR42_RS07505at 1603.342 kb on - strand, within RR42_RS07505at 1603.342 kb on - strand, within RR42_RS07505at 1603.404 kb on + strand, within RR42_RS07505at 1603.404 kb on + strand, within RR42_RS07505at 1603.404 kb on + strand, within RR42_RS07505at 1604.005 kb on + strandat 1604.006 kb on - strandat 1604.345 kb on + strand, within RR42_RS07510at 1604.346 kb on - strand, within RR42_RS07510at 1604.566 kb on + strand, within RR42_RS07510at 1604.566 kb on + strand, within RR42_RS07510at 1604.566 kb on + strand, within RR42_RS07510at 1604.567 kb on - strand, within RR42_RS07510at 1604.567 kb on - strand, within RR42_RS07510at 1604.567 kb on - strand, within RR42_RS07510at 1604.740 kb on - strand, within RR42_RS07510at 1605.389 kb on + strand, within RR42_RS07510at 1605.410 kb on + strand, within RR42_RS07510at 1605.410 kb on + strand, within RR42_RS07510at 1605.411 kb on - strand, within RR42_RS07510at 1605.595 kb on + strandat 1605.778 kb on - strand, within RR42_RS07515at 1605.912 kb on + strand, within RR42_RS07515at 1605.912 kb on + strand, within RR42_RS07515at 1605.912 kb on + strand, within RR42_RS07515at 1605.913 kb on - strand, within RR42_RS07515at 1605.913 kb on - strand, within RR42_RS07515at 1606.050 kb on + strand, within RR42_RS07515at 1606.061 kb on + strand, within RR42_RS07515at 1606.062 kb on - strand, within RR42_RS07515at 1606.129 kb on + strand, within RR42_RS07515at 1606.130 kb on - strand, within RR42_RS07515at 1606.130 kb on - strand, within RR42_RS07515at 1606.189 kb on + strand, within RR42_RS07515at 1606.189 kb on + strand, within RR42_RS07515

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Paraquat dichloride 0.064 mg/ml
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1,602,885 + RR42_RS07505 0.34 +0.1
1,602,886 - RR42_RS07505 0.34 +0.9
1,602,957 + RR42_RS07505 0.39 -0.9
1,602,957 + RR42_RS07505 0.39 -0.4
1,602,958 - RR42_RS07505 0.40 -0.2
1,602,971 - RR42_RS07505 0.40 -1.0
1,603,046 - RR42_RS07505 0.46 +0.2
1,603,341 + RR42_RS07505 0.66 -0.5
1,603,342 - RR42_RS07505 0.66 +3.1
1,603,342 - RR42_RS07505 0.66 -2.2
1,603,404 + RR42_RS07505 0.71 -0.2
1,603,404 + RR42_RS07505 0.71 +1.0
1,603,404 + RR42_RS07505 0.71 +0.2
1,604,005 + -0.7
1,604,006 - -1.6
1,604,345 + RR42_RS07510 0.27 +0.2
1,604,346 - RR42_RS07510 0.27 +0.1
1,604,566 + RR42_RS07510 0.40 +0.5
1,604,566 + RR42_RS07510 0.40 -0.4
1,604,566 + RR42_RS07510 0.40 +2.3
1,604,567 - RR42_RS07510 0.40 +1.1
1,604,567 - RR42_RS07510 0.40 -0.0
1,604,567 - RR42_RS07510 0.40 -0.1
1,604,740 - RR42_RS07510 0.50 -2.0
1,605,389 + RR42_RS07510 0.89 +1.4
1,605,410 + RR42_RS07510 0.90 +0.3
1,605,410 + RR42_RS07510 0.90 +0.6
1,605,411 - RR42_RS07510 0.90 -0.1
1,605,595 + +0.2
1,605,778 - RR42_RS07515 0.10 -0.9
1,605,912 + RR42_RS07515 0.24 -1.3
1,605,912 + RR42_RS07515 0.24 -0.6
1,605,912 + RR42_RS07515 0.24 +0.0
1,605,913 - RR42_RS07515 0.24 -0.5
1,605,913 - RR42_RS07515 0.24 -0.5
1,606,050 + RR42_RS07515 0.39 -1.3
1,606,061 + RR42_RS07515 0.40 +0.2
1,606,062 - RR42_RS07515 0.40 -0.5
1,606,129 + RR42_RS07515 0.47 -1.1
1,606,130 - RR42_RS07515 0.48 +0.2
1,606,130 - RR42_RS07515 0.48 +0.1
1,606,189 + RR42_RS07515 0.54 +0.4
1,606,189 + RR42_RS07515 0.54 +0.5

Or see this region's nucleotide sequence