Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS07215

Experiment: R2A with Paraquat dichloride 0.064 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS07205 and RR42_RS07210 are separated by 397 nucleotidesRR42_RS07210 and RR42_RS07215 overlap by 4 nucleotidesRR42_RS07215 and RR42_RS07220 are separated by 305 nucleotidesRR42_RS07220 and RR42_RS07225 are separated by 295 nucleotides RR42_RS07205: RR42_RS07205 - hypothetical protein, at 1,538,326 to 1,538,742 _RS07205 RR42_RS07210: RR42_RS07210 - hypothetical protein, at 1,539,140 to 1,539,517 _RS07210 RR42_RS07215: RR42_RS07215 - hypothetical protein, at 1,539,514 to 1,539,840 _RS07215 RR42_RS07220: RR42_RS07220 - hypothetical protein, at 1,540,146 to 1,540,331 _RS07220 RR42_RS07225: RR42_RS07225 - hypothetical protein, at 1,540,627 to 1,540,842 _RS07225 Position (kb) 1539 1540Strain fitness (log2 ratio) -2 -1 0 1 2at 1538.524 kb on + strand, within RR42_RS07205at 1538.549 kb on + strand, within RR42_RS07205at 1538.577 kb on - strand, within RR42_RS07205at 1538.585 kb on - strand, within RR42_RS07205at 1538.812 kb on + strandat 1538.813 kb on - strandat 1538.814 kb on + strandat 1538.967 kb on + strandat 1539.040 kb on - strandat 1539.168 kb on + strandat 1539.208 kb on + strand, within RR42_RS07210at 1539.208 kb on + strand, within RR42_RS07210at 1539.208 kb on + strand, within RR42_RS07210at 1539.209 kb on - strand, within RR42_RS07210at 1539.209 kb on - strand, within RR42_RS07210at 1539.209 kb on - strand, within RR42_RS07210at 1539.209 kb on - strand, within RR42_RS07210at 1539.210 kb on + strand, within RR42_RS07210at 1539.211 kb on - strand, within RR42_RS07210at 1539.258 kb on + strand, within RR42_RS07210at 1539.258 kb on + strand, within RR42_RS07210at 1539.258 kb on + strand, within RR42_RS07210at 1539.259 kb on - strand, within RR42_RS07210at 1539.260 kb on + strand, within RR42_RS07210at 1539.260 kb on + strand, within RR42_RS07210at 1539.261 kb on - strand, within RR42_RS07210at 1539.261 kb on - strand, within RR42_RS07210at 1539.329 kb on - strand, within RR42_RS07210at 1539.329 kb on - strand, within RR42_RS07210at 1539.364 kb on + strand, within RR42_RS07210at 1539.365 kb on - strand, within RR42_RS07210at 1539.365 kb on - strand, within RR42_RS07210at 1539.365 kb on - strand, within RR42_RS07210at 1539.365 kb on - strand, within RR42_RS07210at 1539.490 kb on - strandat 1539.665 kb on + strand, within RR42_RS07215at 1539.689 kb on - strand, within RR42_RS07215at 1539.759 kb on - strand, within RR42_RS07215at 1539.853 kb on + strandat 1539.854 kb on + strandat 1539.854 kb on + strandat 1539.855 kb on - strandat 1539.874 kb on + strandat 1539.874 kb on + strandat 1540.050 kb on + strandat 1540.051 kb on - strandat 1540.051 kb on - strandat 1540.104 kb on - strandat 1540.104 kb on - strandat 1540.177 kb on - strand, within RR42_RS07220at 1540.195 kb on - strand, within RR42_RS07220at 1540.206 kb on - strand, within RR42_RS07220at 1540.206 kb on - strand, within RR42_RS07220at 1540.207 kb on + strand, within RR42_RS07220at 1540.451 kb on + strandat 1540.451 kb on + strandat 1540.452 kb on - strandat 1540.466 kb on + strandat 1540.572 kb on + strandat 1540.573 kb on - strandat 1540.573 kb on - strandat 1540.715 kb on + strand, within RR42_RS07225

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Paraquat dichloride 0.064 mg/ml
remove
1,538,524 + RR42_RS07205 0.47 -0.4
1,538,549 + RR42_RS07205 0.53 -0.4
1,538,577 - RR42_RS07205 0.60 -0.1
1,538,585 - RR42_RS07205 0.62 -1.4
1,538,812 + -1.3
1,538,813 - +0.1
1,538,814 + -0.7
1,538,967 + +0.7
1,539,040 - +1.1
1,539,168 + -0.3
1,539,208 + RR42_RS07210 0.18 +0.2
1,539,208 + RR42_RS07210 0.18 -0.8
1,539,208 + RR42_RS07210 0.18 +0.7
1,539,209 - RR42_RS07210 0.18 +0.1
1,539,209 - RR42_RS07210 0.18 +1.3
1,539,209 - RR42_RS07210 0.18 -1.0
1,539,209 - RR42_RS07210 0.18 +0.3
1,539,210 + RR42_RS07210 0.19 +0.3
1,539,211 - RR42_RS07210 0.19 +0.5
1,539,258 + RR42_RS07210 0.31 +0.0
1,539,258 + RR42_RS07210 0.31 -0.3
1,539,258 + RR42_RS07210 0.31 +0.4
1,539,259 - RR42_RS07210 0.31 -0.9
1,539,260 + RR42_RS07210 0.32 -0.9
1,539,260 + RR42_RS07210 0.32 -1.1
1,539,261 - RR42_RS07210 0.32 -1.2
1,539,261 - RR42_RS07210 0.32 +1.1
1,539,329 - RR42_RS07210 0.50 -0.3
1,539,329 - RR42_RS07210 0.50 +1.0
1,539,364 + RR42_RS07210 0.59 -1.2
1,539,365 - RR42_RS07210 0.60 +2.0
1,539,365 - RR42_RS07210 0.60 -1.2
1,539,365 - RR42_RS07210 0.60 +0.1
1,539,365 - RR42_RS07210 0.60 +0.1
1,539,490 - -0.3
1,539,665 + RR42_RS07215 0.46 +0.7
1,539,689 - RR42_RS07215 0.54 -2.4
1,539,759 - RR42_RS07215 0.75 +0.8
1,539,853 + -0.7
1,539,854 + -0.3
1,539,854 + -1.9
1,539,855 - -1.1
1,539,874 + +0.0
1,539,874 + -0.4
1,540,050 + -1.7
1,540,051 - +0.4
1,540,051 - +0.1
1,540,104 - +0.9
1,540,104 - -1.7
1,540,177 - RR42_RS07220 0.17 -0.8
1,540,195 - RR42_RS07220 0.26 +0.1
1,540,206 - RR42_RS07220 0.32 -0.4
1,540,206 - RR42_RS07220 0.32 -0.0
1,540,207 + RR42_RS07220 0.33 -0.5
1,540,451 + -0.7
1,540,451 + +0.0
1,540,452 - -0.9
1,540,466 + +0.4
1,540,572 + +0.3
1,540,573 - -0.3
1,540,573 - -0.7
1,540,715 + RR42_RS07225 0.41 -1.0

Or see this region's nucleotide sequence