Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS07110

Experiment: R2A with Paraquat dichloride 0.064 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS07100 and RR42_RS07105 are separated by 85 nucleotidesRR42_RS07105 and RR42_RS07110 are separated by 6 nucleotidesRR42_RS07110 and RR42_RS07115 are separated by 263 nucleotidesRR42_RS07115 and RR42_RS07120 overlap by 1 nucleotides RR42_RS07100: RR42_RS07100 - hypothetical protein, at 1,524,253 to 1,524,762 _RS07100 RR42_RS07105: RR42_RS07105 - hypothetical protein, at 1,524,848 to 1,525,684 _RS07105 RR42_RS07110: RR42_RS07110 - hypothetical protein, at 1,525,691 to 1,525,933 _RS07110 RR42_RS07115: RR42_RS07115 - hypothetical protein, at 1,526,197 to 1,526,499 _RS07115 RR42_RS07120: RR42_RS07120 - hypothetical protein, at 1,526,499 to 1,527,764 _RS07120 Position (kb) 1525 1526Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1524.721 kb on - strandat 1524.721 kb on - strandat 1524.721 kb on - strandat 1524.785 kb on - strandat 1524.840 kb on + strandat 1524.947 kb on + strand, within RR42_RS07105at 1525.031 kb on + strand, within RR42_RS07105at 1525.197 kb on - strand, within RR42_RS07105at 1525.214 kb on - strand, within RR42_RS07105at 1525.457 kb on + strand, within RR42_RS07105at 1525.457 kb on + strand, within RR42_RS07105at 1525.458 kb on - strand, within RR42_RS07105at 1525.493 kb on - strand, within RR42_RS07105at 1525.493 kb on - strand, within RR42_RS07105at 1525.493 kb on - strand, within RR42_RS07105at 1525.507 kb on - strand, within RR42_RS07105at 1525.594 kb on - strand, within RR42_RS07105at 1525.682 kb on + strandat 1525.683 kb on - strandat 1525.728 kb on - strand, within RR42_RS07110at 1525.981 kb on + strandat 1526.193 kb on - strandat 1526.347 kb on - strand, within RR42_RS07115at 1526.523 kb on - strandat 1526.599 kb on + strandat 1526.600 kb on - strandat 1526.663 kb on + strand, within RR42_RS07120at 1526.695 kb on + strand, within RR42_RS07120at 1526.696 kb on - strand, within RR42_RS07120at 1526.811 kb on + strand, within RR42_RS07120at 1526.886 kb on - strand, within RR42_RS07120

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Paraquat dichloride 0.064 mg/ml
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1,524,721 - -0.9
1,524,721 - -2.8
1,524,721 - -0.1
1,524,785 - +1.3
1,524,840 + -1.3
1,524,947 + RR42_RS07105 0.12 -1.9
1,525,031 + RR42_RS07105 0.22 +0.1
1,525,197 - RR42_RS07105 0.42 -0.2
1,525,214 - RR42_RS07105 0.44 +0.4
1,525,457 + RR42_RS07105 0.73 -0.9
1,525,457 + RR42_RS07105 0.73 +0.3
1,525,458 - RR42_RS07105 0.73 -0.3
1,525,493 - RR42_RS07105 0.77 +0.3
1,525,493 - RR42_RS07105 0.77 +0.2
1,525,493 - RR42_RS07105 0.77 +0.6
1,525,507 - RR42_RS07105 0.79 -0.5
1,525,594 - RR42_RS07105 0.89 -0.2
1,525,682 + +1.1
1,525,683 - -1.2
1,525,728 - RR42_RS07110 0.15 -1.3
1,525,981 + -0.3
1,526,193 - +0.1
1,526,347 - RR42_RS07115 0.50 +0.8
1,526,523 - -1.9
1,526,599 + -0.4
1,526,600 - -0.3
1,526,663 + RR42_RS07120 0.13 +0.4
1,526,695 + RR42_RS07120 0.15 +0.2
1,526,696 - RR42_RS07120 0.16 +1.8
1,526,811 + RR42_RS07120 0.25 -0.0
1,526,886 - RR42_RS07120 0.31 -1.0

Or see this region's nucleotide sequence