Experiment: R2A with Paraquat dichloride 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS06825 and RR42_RS06830 are separated by 409 nucleotides RR42_RS06830 and RR42_RS06835 are separated by 2 nucleotides RR42_RS06835 and RR42_RS06845 are separated by 403 nucleotides RR42_RS06845 and RR42_RS06850 overlap by 8 nucleotides
RR42_RS06825: RR42_RS06825 - hypothetical protein, at 1,475,899 to 1,476,567
_RS06825
RR42_RS06830: RR42_RS06830 - hypothetical protein, at 1,476,977 to 1,477,378
_RS06830
RR42_RS06835: RR42_RS06835 - recombinase RdgC, at 1,477,381 to 1,478,319
_RS06835
RR42_RS06845: RR42_RS06845 - hypothetical protein, at 1,478,723 to 1,479,019
_RS06845
RR42_RS06850: RR42_RS06850 - hypothetical protein, at 1,479,012 to 1,479,467
_RS06850
Position (kb) 1477
1478
1479 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1476.454 kb on + strand, within RR42_RS06825 at 1476.454 kb on + strand, within RR42_RS06825 at 1476.454 kb on + strand, within RR42_RS06825 at 1476.454 kb on + strand, within RR42_RS06825 at 1476.484 kb on - strand, within RR42_RS06825 at 1476.547 kb on + strand at 1476.607 kb on + strand at 1476.757 kb on + strand at 1476.761 kb on - strand at 1476.777 kb on + strand at 1476.777 kb on + strand at 1476.778 kb on - strand at 1476.780 kb on + strand at 1477.250 kb on - strand, within RR42_RS06830 at 1477.250 kb on - strand, within RR42_RS06830 at 1477.250 kb on - strand, within RR42_RS06830 at 1477.276 kb on - strand, within RR42_RS06830 at 1477.563 kb on + strand, within RR42_RS06835 at 1477.620 kb on - strand, within RR42_RS06835 at 1477.620 kb on - strand, within RR42_RS06835 at 1477.697 kb on - strand, within RR42_RS06835 at 1477.697 kb on - strand, within RR42_RS06835 at 1477.697 kb on - strand, within RR42_RS06835 at 1477.829 kb on + strand, within RR42_RS06835 at 1477.965 kb on + strand, within RR42_RS06835 at 1477.969 kb on - strand, within RR42_RS06835 at 1477.993 kb on + strand, within RR42_RS06835 at 1478.023 kb on - strand, within RR42_RS06835 at 1478.316 kb on - strand at 1478.316 kb on - strand at 1478.316 kb on - strand at 1478.481 kb on + strand at 1478.514 kb on + strand at 1478.515 kb on - strand at 1478.515 kb on - strand at 1478.515 kb on - strand at 1478.615 kb on + strand at 1478.616 kb on - strand at 1478.616 kb on - strand at 1478.796 kb on + strand, within RR42_RS06845 at 1478.803 kb on + strand, within RR42_RS06845 at 1478.804 kb on - strand, within RR42_RS06845 at 1478.804 kb on - strand, within RR42_RS06845 at 1478.804 kb on - strand, within RR42_RS06845 at 1478.804 kb on - strand, within RR42_RS06845 at 1478.804 kb on - strand, within RR42_RS06845 at 1478.889 kb on - strand, within RR42_RS06845 at 1479.124 kb on - strand, within RR42_RS06850 at 1479.230 kb on + strand, within RR42_RS06850
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Paraquat dichloride 0.064 mg/ml remove 1,476,454 + RR42_RS06825 0.83 -0.8 1,476,454 + RR42_RS06825 0.83 +0.9 1,476,454 + RR42_RS06825 0.83 -1.9 1,476,454 + RR42_RS06825 0.83 +1.5 1,476,484 - RR42_RS06825 0.87 +1.8 1,476,547 + +0.3 1,476,607 + -0.1 1,476,757 + +0.9 1,476,761 - -1.1 1,476,777 + +0.3 1,476,777 + +0.1 1,476,778 - -0.6 1,476,780 + +0.9 1,477,250 - RR42_RS06830 0.68 -0.2 1,477,250 - RR42_RS06830 0.68 +0.6 1,477,250 - RR42_RS06830 0.68 -0.7 1,477,276 - RR42_RS06830 0.74 +0.0 1,477,563 + RR42_RS06835 0.19 +0.4 1,477,620 - RR42_RS06835 0.25 +1.3 1,477,620 - RR42_RS06835 0.25 -0.6 1,477,697 - RR42_RS06835 0.34 +0.4 1,477,697 - RR42_RS06835 0.34 -0.7 1,477,697 - RR42_RS06835 0.34 +0.3 1,477,829 + RR42_RS06835 0.48 +0.7 1,477,965 + RR42_RS06835 0.62 +1.2 1,477,969 - RR42_RS06835 0.63 +0.2 1,477,993 + RR42_RS06835 0.65 -0.3 1,478,023 - RR42_RS06835 0.68 +0.1 1,478,316 - +0.7 1,478,316 - +0.4 1,478,316 - -0.3 1,478,481 + -0.1 1,478,514 + -1.4 1,478,515 - +2.2 1,478,515 - +0.7 1,478,515 - -1.3 1,478,615 + -0.9 1,478,616 - -0.4 1,478,616 - -0.2 1,478,796 + RR42_RS06845 0.25 -0.0 1,478,803 + RR42_RS06845 0.27 +0.0 1,478,804 - RR42_RS06845 0.27 +0.3 1,478,804 - RR42_RS06845 0.27 -0.6 1,478,804 - RR42_RS06845 0.27 +0.4 1,478,804 - RR42_RS06845 0.27 +2.2 1,478,804 - RR42_RS06845 0.27 +1.0 1,478,889 - RR42_RS06845 0.56 +0.7 1,479,124 - RR42_RS06850 0.25 +0.7 1,479,230 + RR42_RS06850 0.48 +0.1
Or see this region's nucleotide sequence