Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS06810

Experiment: R2A with Paraquat dichloride 0.064 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Paraquat dichloride 0.064 mg/ml
1,473,367	+		RR42_RS06800	0.27	+0.7
1,473,367	+		RR42_RS06800	0.27	+0.6
1,473,368	-		RR42_RS06800	0.27	+0.1
1,473,368	-		RR42_RS06800	0.27	-0.6
1,473,399	-		RR42_RS06800	0.30	-1.3
1,473,402	-		RR42_RS06800	0.31	+0.2
1,473,405	+		RR42_RS06800	0.31	-0.8
1,473,405	+		RR42_RS06800	0.31	-1.8
1,473,405	+		RR42_RS06800	0.31	-0.1
1,473,405	+		RR42_RS06800	0.31	+0.6
1,473,405	+		RR42_RS06800	0.31	-0.2
1,473,405	+		RR42_RS06800	0.31	+0.0
1,473,406	-		RR42_RS06800	0.31	-0.1
1,473,434	+		RR42_RS06800	0.34	-0.5
1,473,441	+		RR42_RS06800	0.35	+2.2
1,473,449	+		RR42_RS06800	0.36	+0.5
1,473,489	+		RR42_RS06800	0.41	+1.0
1,473,489	+		RR42_RS06800	0.41	+0.1
1,473,489	+		RR42_RS06800	0.41	-0.4
1,473,573	+		RR42_RS06800	0.50	+0.1
1,473,574	-		RR42_RS06800	0.50	-0.4
1,473,587	+		RR42_RS06800	0.52	+0.6
1,473,611	-		RR42_RS06800	0.55	-1.9
1,473,626	+		RR42_RS06800	0.56	-0.1
1,473,626	+		RR42_RS06800	0.56	-0.6
1,473,627	-		RR42_RS06800	0.57	-0.3
1,473,660	+		RR42_RS06800	0.60	+0.6
1,473,660	+		RR42_RS06800	0.60	-0.6
1,473,660	+		RR42_RS06800	0.60	+0.6
1,473,660	+		RR42_RS06800	0.60	+0.1
1,473,661	-		RR42_RS06800	0.60	-0.1
1,473,661	-		RR42_RS06800	0.60	+0.6
1,473,667	+		RR42_RS06800	0.61	-1.0
1,473,667	+		RR42_RS06800	0.61	-0.8
1,473,667	+		RR42_RS06800	0.61	-0.7
1,473,667	+		RR42_RS06800	0.61	-1.1
1,473,667	+		RR42_RS06800	0.61	+0.7
1,473,668	-		RR42_RS06800	0.61	-0.1
1,473,668	-		RR42_RS06800	0.61	+0.0
1,473,668	-		RR42_RS06800	0.61	-1.7
1,473,682	+		RR42_RS06800	0.63	+1.6
1,473,798	+		RR42_RS06800	0.76	-0.8
1,473,798	+		RR42_RS06800	0.76	-0.3
1,473,798	+		RR42_RS06800	0.76	+0.3
1,473,798	+		RR42_RS06800	0.76	+0.8
1,473,799	-		RR42_RS06800	0.76	-1.4
1,473,799	-		RR42_RS06800	0.76	-0.3
1,473,799	-		RR42_RS06800	0.76	-1.0
1,473,827	-		RR42_RS06800	0.79	-0.4
1,473,834	-		RR42_RS06800	0.80	+0.7
1,473,834	-		RR42_RS06800	0.80	-0.6
1,473,863	+		RR42_RS06800	0.83	-0.8
1,474,026	+				-0.3
1,474,026	+				+0.9
1,474,027	-				-1.0
1,474,027	-				-0.4
1,474,029	+				+1.0
1,474,029	+				-0.8
1,474,029	+				-0.3
1,474,029	+				+0.6
1,474,030	-				-1.1
1,474,121	+				+0.7
1,474,122	-				+0.6
1,474,122	-				-1.3
1,474,128	+				+1.4
1,474,128	+				-1.1
1,474,202	-		RR42_RS06805	0.31	+0.3
1,474,213	+		RR42_RS06805	0.36	+0.7
1,474,237	-		RR42_RS06805	0.46	+2.2
1,474,361	-				-0.7
1,474,361	-				+0.2
1,474,401	+		RR42_RS06810	0.13	+0.7
1,474,401	+		RR42_RS06810	0.13	+0.7
1,474,402	-		RR42_RS06810	0.13	+1.3
1,474,402	-		RR42_RS06810	0.13	+0.7
1,474,518	+		RR42_RS06810	0.55	+1.6
1,474,628	-				+0.8
1,474,628	-				-0.5
1,474,660	-				-0.2
1,474,724	-				-0.6
1,474,733	+				-0.3
1,474,908	+		RR42_RS06815	0.10	-0.3
1,474,993	-		RR42_RS06815	0.25	+0.1
1,475,063	+		RR42_RS06815	0.37	+0.0
1,475,063	+		RR42_RS06815	0.37	-3.1
1,475,063	+		RR42_RS06815	0.37	+0.2
1,475,296	+		RR42_RS06815	0.78	+0.7
1,475,296	+		RR42_RS06815	0.78	+1.2
1,475,296	+		RR42_RS06815	0.78	-1.4
1,475,296	+		RR42_RS06815	0.78	-0.5
1,475,296	+		RR42_RS06815	0.78	+1.0
1,475,322	+		RR42_RS06815	0.82	-0.1
1,475,463	+		RR42_RS06820	0.16	-1.6
1,475,466	+		RR42_RS06820	0.17	-3.2
1,475,466	+		RR42_RS06820	0.17	-1.4
1,475,466	+		RR42_RS06820	0.17	+0.9
1,475,466	+		RR42_RS06820	0.17	+0.3
1,475,467	-		RR42_RS06820	0.17	+0.3
1,475,569	-		RR42_RS06820	0.58	-0.6