Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS05885

Experiment: R2A with Paraquat dichloride 0.064 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Paraquat dichloride 0.064 mg/ml
1,290,813	+				+0.9
1,290,813	+				-0.7
1,290,813	+				+0.5
1,290,813	+				+0.9
1,290,813	+				-0.2
1,290,814	-				-0.1
1,290,814	-				-3.1
1,290,814	-				-1.1
1,290,820	+				-1.7
1,290,820	+				-0.2
1,290,820	+				+0.4
1,290,821	-				-0.2
1,290,821	-				+0.9
1,290,821	-				-0.1
1,290,821	-				-0.7
1,290,821	-				-0.1
1,290,821	-				+0.6
1,291,015	+		RR42_RS05880	0.23	-1.5
1,291,015	+		RR42_RS05880	0.23	+1.1
1,291,015	+		RR42_RS05880	0.23	-1.3
1,291,016	-		RR42_RS05880	0.23	+1.7
1,291,016	-		RR42_RS05880	0.23	+0.6
1,291,016	-		RR42_RS05880	0.23	+0.3
1,291,016	-		RR42_RS05880	0.23	-0.3
1,291,016	-		RR42_RS05880	0.23	+0.6
1,291,078	+		RR42_RS05880	0.30	+1.3
1,291,079	-		RR42_RS05880	0.30	-1.9
1,291,079	-		RR42_RS05880	0.30	+0.9
1,291,162	+		RR42_RS05880	0.40	+0.4
1,291,162	+		RR42_RS05880	0.40	+0.4
1,291,163	-		RR42_RS05880	0.40	-1.5
1,291,163	-		RR42_RS05880	0.40	-0.5
1,291,232	+		RR42_RS05880	0.48	+0.7
1,291,502	-		RR42_RS05880	0.80	-1.4
1,291,756	+				-1.1
1,291,799	+				+0.0
1,291,800	-				+0.4
1,291,800	-				+1.7
1,291,800	-				+0.7
1,291,800	-				+1.3
1,291,847	+				-0.2
1,291,847	+				-2.2
1,291,847	+				-0.3
1,292,276	+		RR42_RS05885	0.13	-0.3
1,292,276	+		RR42_RS05885	0.13	+0.5
1,292,277	-		RR42_RS05885	0.13	+1.5
1,292,277	-		RR42_RS05885	0.13	-1.9
1,292,277	-		RR42_RS05885	0.13	-0.5
1,292,366	+		RR42_RS05885	0.15	+1.0
1,292,366	+		RR42_RS05885	0.15	-0.3
1,292,367	-		RR42_RS05885	0.15	+0.7
1,292,367	-		RR42_RS05885	0.15	+3.6
1,292,484	-		RR42_RS05885	0.18	-1.5
1,292,944	-		RR42_RS05885	0.29	-0.1
1,293,112	+		RR42_RS05885	0.33	-0.1
1,293,177	+		RR42_RS05885	0.34	+0.0
1,293,319	-		RR42_RS05885	0.38	-1.4
1,293,624	-		RR42_RS05885	0.45	-0.7
1,293,651	-		RR42_RS05885	0.46	-1.3
1,294,108	+		RR42_RS05885	0.57	-1.8
1,294,145	-		RR42_RS05885	0.58	+1.7
1,294,611	+		RR42_RS05885	0.69	-0.9
1,295,161	+		RR42_RS05885	0.82	-1.6
1,295,248	+		RR42_RS05885	0.84	-0.3
1,295,248	+		RR42_RS05885	0.84	+0.7
1,295,248	+		RR42_RS05885	0.84	-1.1
1,295,249	-		RR42_RS05885	0.84	+0.2
1,295,249	-		RR42_RS05885	0.84	-2.5
1,295,250	-		RR42_RS05885	0.84	-0.2
1,295,272	-		RR42_RS05885	0.84	-0.3
1,295,713	+				-0.3
1,295,713	+				-2.1
1,295,713	+				-1.5
1,295,714	-				-1.7
1,295,714	-				-0.7
1,295,714	-				-2.0
1,295,714	-				-1.7
1,295,717	+				-0.7
1,295,718	-				-0.6
1,296,090	+				-0.7
1,296,090	+				+0.3
1,296,091	-				+0.2
1,296,091	-				+0.3
1,296,091	-				-1.1
1,296,091	-				-0.5
1,296,094	-				-0.7
1,296,094	-				-1.6
1,296,173	-				+0.4
1,296,173	-				-0.2
1,296,372	+				-0.3
1,296,372	+				+0.8
1,296,373	-				+0.7
1,296,385	-				+0.0
1,296,385	-				+0.1
1,296,385	-				-1.2
1,296,393	+				-1.3
1,296,393	+				+0.3
1,296,394	-				+0.3
1,296,660	+		RR42_RS05890	0.16	-1.8
1,296,699	+		RR42_RS05890	0.18	-1.2
1,296,700	-		RR42_RS05890	0.18	-0.1
1,296,816	+		RR42_RS05890	0.21	-0.1
1,296,816	+		RR42_RS05890	0.21	+0.4
1,296,817	-		RR42_RS05890	0.22	+0.1
1,296,871	-		RR42_RS05890	0.23	-0.5
1,296,871	-		RR42_RS05890	0.23	-2.2
1,296,871	-		RR42_RS05890	0.23	-1.2