Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS05840

Experiment: R2A with Paraquat dichloride 0.064 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Paraquat dichloride 0.064 mg/ml
1,282,489	-		RR42_RS05835	0.23	+0.2
1,282,489	-		RR42_RS05835	0.23	+0.3
1,282,489	-		RR42_RS05835	0.23	+0.1
1,282,500	+		RR42_RS05835	0.24	-1.2
1,282,500	+		RR42_RS05835	0.24	+1.3
1,282,500	+		RR42_RS05835	0.24	-0.3
1,282,501	-		RR42_RS05835	0.24	+0.4
1,282,501	-		RR42_RS05835	0.24	-1.2
1,282,501	-		RR42_RS05835	0.24	-0.3
1,282,566	+		RR42_RS05835	0.30	+2.9
1,282,567	-		RR42_RS05835	0.30	+0.8
1,282,582	+		RR42_RS05835	0.31	+0.8
1,282,582	+		RR42_RS05835	0.31	+1.0
1,282,590	+		RR42_RS05835	0.32	-0.5
1,282,590	+		RR42_RS05835	0.32	+0.5
1,282,590	+		RR42_RS05835	0.32	-0.1
1,282,591	-		RR42_RS05835	0.32	-1.1
1,282,593	+		RR42_RS05835	0.32	-0.8
1,282,594	-		RR42_RS05835	0.32	+2.3
1,282,594	-		RR42_RS05835	0.32	-0.6
1,282,594	-		RR42_RS05835	0.32	+0.8
1,282,597	-		RR42_RS05835	0.32	+0.4
1,282,843	+		RR42_RS05835	0.53	+0.2
1,282,843	+		RR42_RS05835	0.53	-1.4
1,282,876	-		RR42_RS05835	0.56	-0.2
1,282,885	-		RR42_RS05835	0.57	-0.5
1,282,961	-		RR42_RS05835	0.63	-0.3
1,282,963	-		RR42_RS05835	0.63	+0.5
1,283,028	+		RR42_RS05835	0.69	-0.7
1,283,200	-		RR42_RS05835	0.84	-0.5
1,283,269	-		RR42_RS05835	0.89	-0.3
1,283,269	-		RR42_RS05835	0.89	-0.3
1,283,271	+		RR42_RS05835	0.90	+1.0
1,283,271	+		RR42_RS05835	0.90	+0.5
1,283,271	+		RR42_RS05835	0.90	-2.0
1,283,272	-		RR42_RS05835	0.90	-0.5
1,283,272	-		RR42_RS05835	0.90	-1.5
1,283,331	+				+0.7
1,283,331	+				+0.9
1,283,332	-				-0.3
1,283,936	-		RR42_RS05840	0.80	+0.7
1,284,288	-		RR42_RS05845	0.25	-0.3
1,284,336	-		RR42_RS05845	0.30	+0.3
1,284,386	+		RR42_RS05845	0.36	+1.3
1,284,386	+		RR42_RS05845	0.36	+0.9
1,284,387	-		RR42_RS05845	0.36	+0.3
1,284,387	-		RR42_RS05845	0.36	-1.7
1,284,494	+		RR42_RS05845	0.48	-0.1
1,284,494	+		RR42_RS05845	0.48	-0.3
1,284,494	+		RR42_RS05845	0.48	-0.3
1,284,495	-		RR42_RS05845	0.48	-1.0
1,284,500	+		RR42_RS05845	0.49	+0.2
1,284,500	+		RR42_RS05845	0.49	-0.2
1,284,500	+		RR42_RS05845	0.49	+0.6
1,284,500	+		RR42_RS05845	0.49	+1.5
1,284,500	+		RR42_RS05845	0.49	-1.5
1,284,500	+		RR42_RS05845	0.49	-0.2
1,284,500	+		RR42_RS05845	0.49	-0.4
1,284,500	+		RR42_RS05845	0.49	+1.5
1,284,501	-		RR42_RS05845	0.49	+1.3
1,284,501	-		RR42_RS05845	0.49	-0.1
1,284,501	-		RR42_RS05845	0.49	-1.5
1,284,501	-		RR42_RS05845	0.49	+0.2
1,284,501	-		RR42_RS05845	0.49	+0.5
1,284,632	+		RR42_RS05845	0.64	-1.6
1,284,632	+		RR42_RS05845	0.64	+0.2
1,284,632	+		RR42_RS05845	0.64	-0.5
1,284,632	+		RR42_RS05845	0.64	+0.7
1,284,632	+		RR42_RS05845	0.64	-0.2
1,284,632	+		RR42_RS05845	0.64	+0.1
1,284,632	+		RR42_RS05845	0.64	-0.6
1,284,632	+		RR42_RS05845	0.64	+2.6
1,284,632	+		RR42_RS05845	0.64	+0.3
1,284,632	+		RR42_RS05845	0.64	-0.6
1,284,633	-		RR42_RS05845	0.64	-0.1
1,284,633	-		RR42_RS05845	0.64	+1.4
1,284,633	-		RR42_RS05845	0.64	-0.2
1,284,698	+		RR42_RS05845	0.71	+0.7
1,284,699	-		RR42_RS05845	0.72	+0.3
1,284,704	+		RR42_RS05845	0.72	-0.5
1,284,704	+		RR42_RS05845	0.72	-0.1
1,284,704	+		RR42_RS05845	0.72	-0.0
1,284,705	-		RR42_RS05845	0.72	+0.3
1,284,887	+				+0.3
1,284,887	+				+2.3
1,284,888	-				+0.7
1,284,888	-				-0.9
1,284,888	-				-1.4
1,284,888	-				-0.1
1,284,888	-				-0.1
1,284,888	-				+0.3
1,284,888	-				+1.1
1,284,990	+				-0.1
1,284,992	+				-0.5
1,284,992	+				-0.4
1,284,993	-				-0.1
1,284,993	-				-1.0
1,285,058	+				+1.2
1,285,059	-				+0.4
1,285,059	-				-0.3