Experiment: R2A with Paraquat dichloride 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS05835 and RR42_RS05840 are separated by 52 nucleotides RR42_RS05840 and RR42_RS05845 are separated by 10 nucleotides
RR42_RS05835: RR42_RS05835 - VWA domain-containing protein, at 1,282,217 to 1,283,392
_RS05835
RR42_RS05840: RR42_RS05840 - GCN5 family acetyltransferase, at 1,283,445 to 1,284,059
_RS05840
RR42_RS05845: RR42_RS05845 - ATPase AAA, at 1,284,070 to 1,284,948
_RS05845
Position (kb)
1283
1284
1285 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1282.489 kb on - strand, within RR42_RS05835 at 1282.489 kb on - strand, within RR42_RS05835 at 1282.489 kb on - strand, within RR42_RS05835 at 1282.500 kb on + strand, within RR42_RS05835 at 1282.500 kb on + strand, within RR42_RS05835 at 1282.500 kb on + strand, within RR42_RS05835 at 1282.501 kb on - strand, within RR42_RS05835 at 1282.501 kb on - strand, within RR42_RS05835 at 1282.501 kb on - strand, within RR42_RS05835 at 1282.566 kb on + strand, within RR42_RS05835 at 1282.567 kb on - strand, within RR42_RS05835 at 1282.582 kb on + strand, within RR42_RS05835 at 1282.582 kb on + strand, within RR42_RS05835 at 1282.590 kb on + strand, within RR42_RS05835 at 1282.590 kb on + strand, within RR42_RS05835 at 1282.590 kb on + strand, within RR42_RS05835 at 1282.591 kb on - strand, within RR42_RS05835 at 1282.593 kb on + strand, within RR42_RS05835 at 1282.594 kb on - strand, within RR42_RS05835 at 1282.594 kb on - strand, within RR42_RS05835 at 1282.594 kb on - strand, within RR42_RS05835 at 1282.597 kb on - strand, within RR42_RS05835 at 1282.843 kb on + strand, within RR42_RS05835 at 1282.843 kb on + strand, within RR42_RS05835 at 1282.876 kb on - strand, within RR42_RS05835 at 1282.885 kb on - strand, within RR42_RS05835 at 1282.961 kb on - strand, within RR42_RS05835 at 1282.963 kb on - strand, within RR42_RS05835 at 1283.028 kb on + strand, within RR42_RS05835 at 1283.200 kb on - strand, within RR42_RS05835 at 1283.269 kb on - strand, within RR42_RS05835 at 1283.269 kb on - strand, within RR42_RS05835 at 1283.271 kb on + strand, within RR42_RS05835 at 1283.271 kb on + strand, within RR42_RS05835 at 1283.271 kb on + strand, within RR42_RS05835 at 1283.272 kb on - strand, within RR42_RS05835 at 1283.272 kb on - strand, within RR42_RS05835 at 1283.331 kb on + strand at 1283.331 kb on + strand at 1283.332 kb on - strand at 1283.936 kb on - strand, within RR42_RS05840 at 1284.288 kb on - strand, within RR42_RS05845 at 1284.336 kb on - strand, within RR42_RS05845 at 1284.386 kb on + strand, within RR42_RS05845 at 1284.386 kb on + strand, within RR42_RS05845 at 1284.387 kb on - strand, within RR42_RS05845 at 1284.387 kb on - strand, within RR42_RS05845 at 1284.494 kb on + strand, within RR42_RS05845 at 1284.494 kb on + strand, within RR42_RS05845 at 1284.494 kb on + strand, within RR42_RS05845 at 1284.495 kb on - strand, within RR42_RS05845 at 1284.500 kb on + strand, within RR42_RS05845 at 1284.500 kb on + strand, within RR42_RS05845 at 1284.500 kb on + strand, within RR42_RS05845 at 1284.500 kb on + strand, within RR42_RS05845 at 1284.500 kb on + strand, within RR42_RS05845 at 1284.500 kb on + strand, within RR42_RS05845 at 1284.500 kb on + strand, within RR42_RS05845 at 1284.500 kb on + strand, within RR42_RS05845 at 1284.501 kb on - strand, within RR42_RS05845 at 1284.501 kb on - strand, within RR42_RS05845 at 1284.501 kb on - strand, within RR42_RS05845 at 1284.501 kb on - strand, within RR42_RS05845 at 1284.501 kb on - strand, within RR42_RS05845 at 1284.632 kb on + strand, within RR42_RS05845 at 1284.632 kb on + strand, within RR42_RS05845 at 1284.632 kb on + strand, within RR42_RS05845 at 1284.632 kb on + strand, within RR42_RS05845 at 1284.632 kb on + strand, within RR42_RS05845 at 1284.632 kb on + strand, within RR42_RS05845 at 1284.632 kb on + strand, within RR42_RS05845 at 1284.632 kb on + strand, within RR42_RS05845 at 1284.632 kb on + strand, within RR42_RS05845 at 1284.632 kb on + strand, within RR42_RS05845 at 1284.633 kb on - strand, within RR42_RS05845 at 1284.633 kb on - strand, within RR42_RS05845 at 1284.633 kb on - strand, within RR42_RS05845 at 1284.698 kb on + strand, within RR42_RS05845 at 1284.699 kb on - strand, within RR42_RS05845 at 1284.704 kb on + strand, within RR42_RS05845 at 1284.704 kb on + strand, within RR42_RS05845 at 1284.704 kb on + strand, within RR42_RS05845 at 1284.705 kb on - strand, within RR42_RS05845 at 1284.887 kb on + strand at 1284.887 kb on + strand at 1284.888 kb on - strand at 1284.888 kb on - strand at 1284.888 kb on - strand at 1284.888 kb on - strand at 1284.888 kb on - strand at 1284.888 kb on - strand at 1284.888 kb on - strand at 1284.990 kb on + strand at 1284.992 kb on + strand at 1284.992 kb on + strand at 1284.993 kb on - strand at 1284.993 kb on - strand at 1285.058 kb on + strand at 1285.059 kb on - strand at 1285.059 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Paraquat dichloride 0.064 mg/ml remove 1,282,489 - RR42_RS05835 0.23 +0.2 1,282,489 - RR42_RS05835 0.23 +0.3 1,282,489 - RR42_RS05835 0.23 +0.1 1,282,500 + RR42_RS05835 0.24 -1.2 1,282,500 + RR42_RS05835 0.24 +1.3 1,282,500 + RR42_RS05835 0.24 -0.3 1,282,501 - RR42_RS05835 0.24 +0.4 1,282,501 - RR42_RS05835 0.24 -1.2 1,282,501 - RR42_RS05835 0.24 -0.3 1,282,566 + RR42_RS05835 0.30 +2.9 1,282,567 - RR42_RS05835 0.30 +0.8 1,282,582 + RR42_RS05835 0.31 +0.8 1,282,582 + RR42_RS05835 0.31 +1.0 1,282,590 + RR42_RS05835 0.32 -0.5 1,282,590 + RR42_RS05835 0.32 +0.5 1,282,590 + RR42_RS05835 0.32 -0.1 1,282,591 - RR42_RS05835 0.32 -1.1 1,282,593 + RR42_RS05835 0.32 -0.8 1,282,594 - RR42_RS05835 0.32 +2.3 1,282,594 - RR42_RS05835 0.32 -0.6 1,282,594 - RR42_RS05835 0.32 +0.8 1,282,597 - RR42_RS05835 0.32 +0.4 1,282,843 + RR42_RS05835 0.53 +0.2 1,282,843 + RR42_RS05835 0.53 -1.4 1,282,876 - RR42_RS05835 0.56 -0.2 1,282,885 - RR42_RS05835 0.57 -0.5 1,282,961 - RR42_RS05835 0.63 -0.3 1,282,963 - RR42_RS05835 0.63 +0.5 1,283,028 + RR42_RS05835 0.69 -0.7 1,283,200 - RR42_RS05835 0.84 -0.5 1,283,269 - RR42_RS05835 0.89 -0.3 1,283,269 - RR42_RS05835 0.89 -0.3 1,283,271 + RR42_RS05835 0.90 +1.0 1,283,271 + RR42_RS05835 0.90 +0.5 1,283,271 + RR42_RS05835 0.90 -2.0 1,283,272 - RR42_RS05835 0.90 -0.5 1,283,272 - RR42_RS05835 0.90 -1.5 1,283,331 + +0.7 1,283,331 + +0.9 1,283,332 - -0.3 1,283,936 - RR42_RS05840 0.80 +0.7 1,284,288 - RR42_RS05845 0.25 -0.3 1,284,336 - RR42_RS05845 0.30 +0.3 1,284,386 + RR42_RS05845 0.36 +1.3 1,284,386 + RR42_RS05845 0.36 +0.9 1,284,387 - RR42_RS05845 0.36 +0.3 1,284,387 - RR42_RS05845 0.36 -1.7 1,284,494 + RR42_RS05845 0.48 -0.1 1,284,494 + RR42_RS05845 0.48 -0.3 1,284,494 + RR42_RS05845 0.48 -0.3 1,284,495 - RR42_RS05845 0.48 -1.0 1,284,500 + RR42_RS05845 0.49 +0.2 1,284,500 + RR42_RS05845 0.49 -0.2 1,284,500 + RR42_RS05845 0.49 +0.6 1,284,500 + RR42_RS05845 0.49 +1.5 1,284,500 + RR42_RS05845 0.49 -1.5 1,284,500 + RR42_RS05845 0.49 -0.2 1,284,500 + RR42_RS05845 0.49 -0.4 1,284,500 + RR42_RS05845 0.49 +1.5 1,284,501 - RR42_RS05845 0.49 +1.3 1,284,501 - RR42_RS05845 0.49 -0.1 1,284,501 - RR42_RS05845 0.49 -1.5 1,284,501 - RR42_RS05845 0.49 +0.2 1,284,501 - RR42_RS05845 0.49 +0.5 1,284,632 + RR42_RS05845 0.64 -1.6 1,284,632 + RR42_RS05845 0.64 +0.2 1,284,632 + RR42_RS05845 0.64 -0.5 1,284,632 + RR42_RS05845 0.64 +0.7 1,284,632 + RR42_RS05845 0.64 -0.2 1,284,632 + RR42_RS05845 0.64 +0.1 1,284,632 + RR42_RS05845 0.64 -0.6 1,284,632 + RR42_RS05845 0.64 +2.6 1,284,632 + RR42_RS05845 0.64 +0.3 1,284,632 + RR42_RS05845 0.64 -0.6 1,284,633 - RR42_RS05845 0.64 -0.1 1,284,633 - RR42_RS05845 0.64 +1.4 1,284,633 - RR42_RS05845 0.64 -0.2 1,284,698 + RR42_RS05845 0.71 +0.7 1,284,699 - RR42_RS05845 0.72 +0.3 1,284,704 + RR42_RS05845 0.72 -0.5 1,284,704 + RR42_RS05845 0.72 -0.1 1,284,704 + RR42_RS05845 0.72 -0.0 1,284,705 - RR42_RS05845 0.72 +0.3 1,284,887 + +0.3 1,284,887 + +2.3 1,284,888 - +0.7 1,284,888 - -0.9 1,284,888 - -1.4 1,284,888 - -0.1 1,284,888 - -0.1 1,284,888 - +0.3 1,284,888 - +1.1 1,284,990 + -0.1 1,284,992 + -0.5 1,284,992 + -0.4 1,284,993 - -0.1 1,284,993 - -1.0 1,285,058 + +1.2 1,285,059 - +0.4 1,285,059 - -0.3
Or see this region's nucleotide sequence