Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS05820

Experiment: R2A with Paraquat dichloride 0.064 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS05810 and RR42_RS05815 overlap by 4 nucleotidesRR42_RS05815 and RR42_RS05820 overlap by 4 nucleotidesRR42_RS05820 and RR42_RS05825 are separated by 82 nucleotides RR42_RS05810: RR42_RS05810 - RNA polymerase sigma factor, at 1,278,101 to 1,278,661 _RS05810 RR42_RS05815: RR42_RS05815 - hypothetical protein, at 1,278,658 to 1,279,056 _RS05815 RR42_RS05820: RR42_RS05820 - hypothetical protein, at 1,279,053 to 1,279,538 _RS05820 RR42_RS05825: RR42_RS05825 - hypothetical protein, at 1,279,621 to 1,281,006 _RS05825 Position (kb) 1279 1280Strain fitness (log2 ratio) -1 0 1 2at 1278.096 kb on - strandat 1278.211 kb on + strand, within RR42_RS05810at 1278.354 kb on - strand, within RR42_RS05810at 1278.522 kb on - strand, within RR42_RS05810at 1278.694 kb on + strandat 1278.694 kb on + strandat 1278.694 kb on + strandat 1278.695 kb on - strandat 1278.695 kb on - strandat 1278.695 kb on - strandat 1278.695 kb on - strandat 1279.064 kb on + strandat 1279.065 kb on - strandat 1279.571 kb on - strandat 1279.742 kb on - strandat 1280.239 kb on - strand, within RR42_RS05825at 1280.239 kb on - strand, within RR42_RS05825at 1280.239 kb on - strand, within RR42_RS05825at 1280.395 kb on - strand, within RR42_RS05825

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Paraquat dichloride 0.064 mg/ml
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1,278,096 - -0.2
1,278,211 + RR42_RS05810 0.20 +0.5
1,278,354 - RR42_RS05810 0.45 +1.9
1,278,522 - RR42_RS05810 0.75 +0.5
1,278,694 + -0.1
1,278,694 + +0.5
1,278,694 + -0.1
1,278,695 - -0.3
1,278,695 - -1.6
1,278,695 - +1.7
1,278,695 - +0.4
1,279,064 + +0.9
1,279,065 - +0.0
1,279,571 - -1.6
1,279,742 - +0.7
1,280,239 - RR42_RS05825 0.45 -1.7
1,280,239 - RR42_RS05825 0.45 -0.8
1,280,239 - RR42_RS05825 0.45 +1.7
1,280,395 - RR42_RS05825 0.56 +0.0

Or see this region's nucleotide sequence