Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS05475

Experiment: R2A with Paraquat dichloride 0.064 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Paraquat dichloride 0.064 mg/ml
1,206,827	+				-0.7
1,206,828	-				-0.5
1,206,828	-				-1.5
1,207,073	+		RR42_RS05470	0.15	-0.1
1,207,118	+		RR42_RS05470	0.23	+0.3
1,207,119	-		RR42_RS05470	0.24	-0.4
1,207,127	-		RR42_RS05470	0.25	+1.3
1,207,127	-		RR42_RS05470	0.25	+0.1
1,207,127	-		RR42_RS05470	0.25	-0.5
1,207,151	+		RR42_RS05470	0.30	-0.9
1,207,151	+		RR42_RS05470	0.30	-0.8
1,207,151	+		RR42_RS05470	0.30	+1.3
1,207,151	+		RR42_RS05470	0.30	-0.2
1,207,151	+		RR42_RS05470	0.30	+0.6
1,207,152	-		RR42_RS05470	0.30	+1.1
1,207,226	+		RR42_RS05470	0.44	+1.7
1,207,227	-		RR42_RS05470	0.44	+0.2
1,207,227	-		RR42_RS05470	0.44	-0.4
1,207,227	-		RR42_RS05470	0.44	+0.4
1,207,227	-		RR42_RS05470	0.44	+0.7
1,207,295	+		RR42_RS05470	0.57	+0.4
1,207,296	-		RR42_RS05470	0.57	+0.3
1,207,325	+		RR42_RS05470	0.62	-0.5
1,207,352	-		RR42_RS05470	0.67	+0.7
1,207,358	+		RR42_RS05470	0.69	-0.3
1,207,358	+		RR42_RS05470	0.69	-0.0
1,207,359	-		RR42_RS05470	0.69	-1.4
1,207,390	+		RR42_RS05470	0.75	-1.6
1,207,391	-		RR42_RS05470	0.75	-1.6
1,207,391	-		RR42_RS05470	0.75	-0.0
1,207,411	+		RR42_RS05470	0.79	+0.2
1,207,411	+		RR42_RS05470	0.79	-0.4
1,207,480	+				+1.7
1,207,481	-				-2.0
1,207,554	+				+0.3
1,207,554	+				-0.3
1,207,554	+				+2.3
1,207,554	+				-0.3
1,207,555	-				+0.0
1,207,555	-				+0.7
1,207,555	-				-0.4
1,207,561	+				+0.2
1,207,561	+				-0.3
1,207,562	-				+0.4
1,207,569	+				-1.1
1,207,570	-				+0.0
1,207,694	-				+1.7
1,207,711	+				+0.3
1,207,711	+				+0.1
1,207,711	+				-1.5
1,207,711	+				+0.4
1,207,712	-				-0.1
1,207,712	-				-1.1
1,207,712	-				-0.5
1,207,712	-				+0.3
1,207,712	-				-2.0
1,207,712	-				-0.3
1,207,959	-		RR42_RS05475	0.17	-0.7
1,208,133	+		RR42_RS05475	0.31	-0.9
1,208,133	+		RR42_RS05475	0.31	-0.3
1,208,133	+		RR42_RS05475	0.31	-0.7
1,208,283	+		RR42_RS05475	0.43	+1.6
1,208,284	-		RR42_RS05475	0.43	+0.7
1,208,403	+		RR42_RS05475	0.53	-1.8
1,208,403	+		RR42_RS05475	0.53	-0.9
1,208,403	+		RR42_RS05475	0.53	+3.3
1,208,403	+		RR42_RS05475	0.53	-1.9
1,208,403	+		RR42_RS05475	0.53	-0.5
1,208,404	-		RR42_RS05475	0.53	+1.3
1,208,404	-		RR42_RS05475	0.53	+0.3
1,208,404	-		RR42_RS05475	0.53	-0.9
1,208,404	-		RR42_RS05475	0.53	+1.0
1,208,404	-		RR42_RS05475	0.53	-0.2
1,208,404	-		RR42_RS05475	0.53	-0.6
1,208,404	-		RR42_RS05475	0.53	-0.1
1,208,517	+		RR42_RS05475	0.62	-0.8
1,208,517	+		RR42_RS05475	0.62	-0.5
1,208,518	-		RR42_RS05475	0.62	-0.9
1,208,518	-		RR42_RS05475	0.62	+0.9
1,208,520	-		RR42_RS05475	0.62	+1.0
1,208,520	-		RR42_RS05475	0.62	+0.7
1,208,526	+		RR42_RS05475	0.63	-1.5
1,208,526	+		RR42_RS05475	0.63	-1.1
1,208,679	+		RR42_RS05475	0.75	+0.4
1,208,679	+		RR42_RS05475	0.75	+0.8
1,208,680	-		RR42_RS05475	0.75	-2.1
1,208,787	+		RR42_RS05475	0.84	-0.8
1,208,788	-		RR42_RS05475	0.84	-1.3
1,208,850	+		RR42_RS05475	0.89	-0.4
1,208,851	-		RR42_RS05475	0.89	-0.5
1,208,851	-		RR42_RS05475	0.89	-0.2
1,208,851	-		RR42_RS05475	0.89	-0.1
1,208,851	-		RR42_RS05475	0.89	+0.3
1,208,935	+				-1.2
1,208,936	-				+0.2
1,208,985	+				+0.4
1,209,460	+				+0.6
1,209,460	+				+0.3
1,209,460	+				-0.0
1,209,460	+				-0.8
1,209,460	+				-1.3
1,209,696	+				+0.3
1,209,696	+				+0.4
1,209,696	+				-0.6
1,209,713	+				+0.8
1,209,792	+				-0.1
1,209,853	+				+3.3
1,209,853	+				+0.5
1,209,853	+				+0.8
1,209,853	+				+0.8
1,209,853	+				+0.1
1,209,853	+				-2.1
1,209,853	+				+0.3
1,209,853	+				+0.3