Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS05320

Experiment: R2A with Paraquat dichloride 0.064 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Paraquat dichloride 0.064 mg/ml
1,174,484	+		RR42_RS05315	0.30	-2.0
1,174,484	+		RR42_RS05315	0.30	-0.0
1,174,484	+		RR42_RS05315	0.30	+2.3
1,174,485	-		RR42_RS05315	0.30	+0.1
1,174,485	-		RR42_RS05315	0.30	-2.0
1,174,517	+		RR42_RS05315	0.33	+0.4
1,174,518	-		RR42_RS05315	0.33	+1.7
1,174,751	+		RR42_RS05315	0.54	-0.8
1,174,751	+		RR42_RS05315	0.54	+0.1
1,174,779	-		RR42_RS05315	0.56	-0.6
1,174,835	+		RR42_RS05315	0.61	-2.2
1,174,835	+		RR42_RS05315	0.61	-0.3
1,174,836	-		RR42_RS05315	0.61	-0.2
1,174,916	+		RR42_RS05315	0.69	+2.3
1,174,916	+		RR42_RS05315	0.69	-1.0
1,174,917	-		RR42_RS05315	0.69	+1.2
1,174,917	-		RR42_RS05315	0.69	+1.0
1,175,349	+				-0.4
1,175,349	+				-0.1
1,175,350	-				+0.2
1,175,350	-				+0.1
1,175,350	-				+1.3
1,175,476	+				+0.8
1,175,476	+				-1.6
1,175,476	+				-2.0
1,175,476	+				-0.1
1,175,476	+				-0.3
1,175,476	+				-0.6
1,175,476	+				-1.2
1,175,476	+				-0.2
1,175,476	+				-0.7
1,175,476	+				-0.5
1,175,477	-				-0.1
1,175,477	-				+2.3
1,175,681	-		RR42_RS05320	0.19	-1.6
1,175,681	-		RR42_RS05320	0.19	+1.4
1,175,833	+		RR42_RS05320	0.30	-1.6
1,175,926	+		RR42_RS05320	0.37	-0.9
1,175,927	-		RR42_RS05320	0.37	-0.6
1,175,941	+		RR42_RS05320	0.38	+0.2
1,175,977	+		RR42_RS05320	0.41	-1.4
1,175,977	+		RR42_RS05320	0.41	+0.7
1,175,977	+		RR42_RS05320	0.41	+0.7
1,175,977	+		RR42_RS05320	0.41	-1.1
1,175,978	-		RR42_RS05320	0.41	+0.5
1,175,978	-		RR42_RS05320	0.41	+0.3
1,176,144	-		RR42_RS05320	0.54	-0.9
1,176,151	+		RR42_RS05320	0.54	+0.1
1,176,410	-		RR42_RS05320	0.74	-1.9
1,176,446	+		RR42_RS05320	0.76	-1.1
1,176,446	+		RR42_RS05320	0.76	+0.4
1,176,447	-		RR42_RS05320	0.76	+1.1
1,176,447	-		RR42_RS05320	0.76	-1.7
1,176,447	-		RR42_RS05320	0.76	-2.6
1,176,447	-		RR42_RS05320	0.76	+0.0
1,176,447	-		RR42_RS05320	0.76	-0.2
1,176,447	-		RR42_RS05320	0.76	+0.3
1,176,448	+		RR42_RS05320	0.76	+2.3
1,176,448	+		RR42_RS05320	0.76	-0.1
1,176,448	+		RR42_RS05320	0.76	-1.6
1,176,448	+		RR42_RS05320	0.76	+1.3
1,176,448	+		RR42_RS05320	0.76	-1.7
1,176,449	-		RR42_RS05320	0.77	+1.3
1,176,449	-		RR42_RS05320	0.77	-0.4
1,176,449	-		RR42_RS05320	0.77	-0.3
1,176,449	-		RR42_RS05320	0.77	+0.2
1,176,449	-		RR42_RS05320	0.77	+0.2
1,176,449	-		RR42_RS05320	0.77	-0.8
1,176,662	-				-1.5
1,176,667	+				-1.2
1,176,668	-				+1.3
1,177,004	+		RR42_RS05325	0.17	-0.4
1,177,004	+		RR42_RS05325	0.17	+1.3
1,177,005	-		RR42_RS05325	0.17	+4.3
1,177,005	-		RR42_RS05325	0.17	+0.1
1,177,100	-		RR42_RS05325	0.26	+0.3
1,177,475	-		RR42_RS05325	0.62	-0.1
1,177,547	+		RR42_RS05325	0.69	-0.4
1,177,548	-		RR42_RS05325	0.69	-0.5
1,177,613	-		RR42_RS05325	0.75	-0.7
1,177,613	-		RR42_RS05325	0.75	+0.0
1,177,670	-		RR42_RS05325	0.81	+1.3
1,177,672	+		RR42_RS05325	0.81	-1.2
1,177,672	+		RR42_RS05325	0.81	-1.7
1,177,672	+		RR42_RS05325	0.81	-1.7
1,177,672	+		RR42_RS05325	0.81	-0.6
1,177,673	-		RR42_RS05325	0.81	+0.6
1,177,673	-		RR42_RS05325	0.81	-1.6
1,177,708	+		RR42_RS05325	0.84	-0.5
1,177,709	-		RR42_RS05325	0.84	+0.1
1,177,738	+		RR42_RS05325	0.87	-1.3
1,177,743	+		RR42_RS05325	0.88	+2.3