Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS04475

Experiment: R2A with Paraquat dichloride 0.064 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS04470 and RR42_RS04475 are separated by 93 nucleotidesRR42_RS04475 and RR42_RS04480 are separated by 0 nucleotidesRR42_RS04480 and RR42_RS04485 are separated by 134 nucleotides RR42_RS04470: RR42_RS04470 - prephenate dehydrogenase, at 999,499 to 1,000,407 _RS04470 RR42_RS04475: RR42_RS04475 - 3-phosphoshikimate 1-carboxyvinyltransferase, at 1,000,501 to 1,001,811 _RS04475 RR42_RS04480: RR42_RS04480 - membrane protein, at 1,001,812 to 1,002,045 _RS04480 RR42_RS04485: RR42_RS04485 - cytidylate kinase, at 1,002,180 to 1,002,842 _RS04485 Position (kb) 1000 1001 1002Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 999.787 kb on - strandat 999.934 kb on + strand, within RR42_RS04470at 999.934 kb on + strand, within RR42_RS04470at 999.934 kb on + strand, within RR42_RS04470at 999.934 kb on + strand, within RR42_RS04470at 999.935 kb on - strand, within RR42_RS04470at 999.935 kb on - strand, within RR42_RS04470at 999.935 kb on - strand, within RR42_RS04470at 1000.267 kb on + strand, within RR42_RS04470at 1000.267 kb on + strand, within RR42_RS04470at 1000.268 kb on - strand, within RR42_RS04470at 1000.332 kb on + strandat 1000.332 kb on + strandat 1000.333 kb on - strandat 1000.488 kb on + strandat 1000.489 kb on - strandat 1000.489 kb on - strandat 1000.828 kb on + strand, within RR42_RS04475at 1000.829 kb on - strand, within RR42_RS04475at 1000.851 kb on + strand, within RR42_RS04475at 1000.852 kb on - strand, within RR42_RS04475at 1000.852 kb on - strand, within RR42_RS04475at 1000.852 kb on - strand, within RR42_RS04475at 1000.852 kb on - strand, within RR42_RS04475at 1000.898 kb on + strand, within RR42_RS04475at 1000.898 kb on + strand, within RR42_RS04475at 1000.915 kb on + strand, within RR42_RS04475at 1001.104 kb on + strand, within RR42_RS04475at 1001.248 kb on + strand, within RR42_RS04475at 1001.249 kb on - strand, within RR42_RS04475at 1001.347 kb on - strand, within RR42_RS04475at 1001.432 kb on + strand, within RR42_RS04475at 1001.451 kb on + strand, within RR42_RS04475at 1001.506 kb on - strand, within RR42_RS04475at 1001.615 kb on - strand, within RR42_RS04475at 1001.677 kb on + strand, within RR42_RS04475at 1001.678 kb on - strand, within RR42_RS04475at 1001.779 kb on + strandat 1001.817 kb on + strandat 1001.818 kb on - strandat 1001.912 kb on + strand, within RR42_RS04480at 1001.913 kb on - strand, within RR42_RS04480at 1001.913 kb on - strand, within RR42_RS04480at 1001.913 kb on - strand, within RR42_RS04480at 1001.913 kb on - strand, within RR42_RS04480at 1001.913 kb on - strand, within RR42_RS04480at 1001.913 kb on - strand, within RR42_RS04480at 1001.987 kb on + strand, within RR42_RS04480at 1001.987 kb on + strand, within RR42_RS04480at 1001.987 kb on + strand, within RR42_RS04480at 1001.987 kb on + strand, within RR42_RS04480at 1001.987 kb on + strand, within RR42_RS04480at 1001.988 kb on - strand, within RR42_RS04480at 1001.988 kb on - strand, within RR42_RS04480at 1001.988 kb on - strand, within RR42_RS04480at 1001.988 kb on - strand, within RR42_RS04480at 1002.048 kb on + strandat 1002.048 kb on + strandat 1002.048 kb on + strandat 1002.048 kb on + strandat 1002.048 kb on + strandat 1002.105 kb on + strandat 1002.116 kb on + strandat 1002.117 kb on - strandat 1002.171 kb on + strandat 1002.185 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Paraquat dichloride 0.064 mg/ml
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999,787 - +1.4
999,934 + RR42_RS04470 0.48 +0.0
999,934 + RR42_RS04470 0.48 -1.3
999,934 + RR42_RS04470 0.48 -1.2
999,934 + RR42_RS04470 0.48 +1.8
999,935 - RR42_RS04470 0.48 +0.8
999,935 - RR42_RS04470 0.48 +0.4
999,935 - RR42_RS04470 0.48 -2.0
1,000,267 + RR42_RS04470 0.84 -0.6
1,000,267 + RR42_RS04470 0.84 +0.4
1,000,268 - RR42_RS04470 0.85 -2.4
1,000,332 + +0.9
1,000,332 + -0.1
1,000,333 - -0.6
1,000,488 + +0.7
1,000,489 - -3.0
1,000,489 - -2.1
1,000,828 + RR42_RS04475 0.25 -0.9
1,000,829 - RR42_RS04475 0.25 +1.4
1,000,851 + RR42_RS04475 0.27 -1.2
1,000,852 - RR42_RS04475 0.27 +0.0
1,000,852 - RR42_RS04475 0.27 -2.0
1,000,852 - RR42_RS04475 0.27 -2.7
1,000,852 - RR42_RS04475 0.27 -0.9
1,000,898 + RR42_RS04475 0.30 -2.0
1,000,898 + RR42_RS04475 0.30 -2.3
1,000,915 + RR42_RS04475 0.32 -2.0
1,001,104 + RR42_RS04475 0.46 -1.2
1,001,248 + RR42_RS04475 0.57 -1.1
1,001,249 - RR42_RS04475 0.57 -2.3
1,001,347 - RR42_RS04475 0.65 +0.4
1,001,432 + RR42_RS04475 0.71 -2.1
1,001,451 + RR42_RS04475 0.72 -0.9
1,001,506 - RR42_RS04475 0.77 -1.8
1,001,615 - RR42_RS04475 0.85 +1.4
1,001,677 + RR42_RS04475 0.90 -1.5
1,001,678 - RR42_RS04475 0.90 -0.4
1,001,779 + +0.0
1,001,817 + -0.4
1,001,818 - +1.1
1,001,912 + RR42_RS04480 0.43 -0.3
1,001,913 - RR42_RS04480 0.43 -0.4
1,001,913 - RR42_RS04480 0.43 -0.2
1,001,913 - RR42_RS04480 0.43 -2.2
1,001,913 - RR42_RS04480 0.43 -0.2
1,001,913 - RR42_RS04480 0.43 -0.1
1,001,913 - RR42_RS04480 0.43 -0.3
1,001,987 + RR42_RS04480 0.75 +0.2
1,001,987 + RR42_RS04480 0.75 +0.1
1,001,987 + RR42_RS04480 0.75 -1.2
1,001,987 + RR42_RS04480 0.75 +0.2
1,001,987 + RR42_RS04480 0.75 +1.0
1,001,988 - RR42_RS04480 0.75 -1.0
1,001,988 - RR42_RS04480 0.75 +0.0
1,001,988 - RR42_RS04480 0.75 -0.4
1,001,988 - RR42_RS04480 0.75 +0.8
1,002,048 + -1.5
1,002,048 + -1.1
1,002,048 + -1.0
1,002,048 + +0.2
1,002,048 + -0.4
1,002,105 + +0.4
1,002,116 + +0.4
1,002,117 - +0.8
1,002,171 + +0.5
1,002,185 + -2.0

Or see this region's nucleotide sequence