Experiment: R2A with Paraquat dichloride 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS04355 and RR42_RS04360 are separated by 157 nucleotides RR42_RS04360 and RR42_RS04365 are separated by 78 nucleotides RR42_RS04365 and RR42_RS04370 are separated by 247 nucleotides
RR42_RS04355: RR42_RS04355 - recombination factor protein RarA, at 968,033 to 969,400
_RS04355
RR42_RS04360: RR42_RS04360 - seryl-tRNA synthetase, at 969,558 to 970,871
_RS04360
RR42_RS04365: RR42_RS04365 - tRNA-Ser, at 970,950 to 971,039
_RS04365
RR42_RS04370: RR42_RS04370 - hypothetical protein, at 971,287 to 972,186
_RS04370
Position (kb) 969
970
971 Strain fitness (log2 ratio) -2
-1
0
1 at 968.765 kb on + strand, within RR42_RS04355 at 968.765 kb on + strand, within RR42_RS04355 at 968.825 kb on + strand, within RR42_RS04355 at 968.825 kb on + strand, within RR42_RS04355 at 968.826 kb on - strand, within RR42_RS04355 at 968.960 kb on + strand, within RR42_RS04355 at 969.014 kb on + strand, within RR42_RS04355 at 969.047 kb on + strand, within RR42_RS04355 at 969.057 kb on - strand, within RR42_RS04355 at 969.057 kb on - strand, within RR42_RS04355 at 969.194 kb on + strand, within RR42_RS04355 at 969.194 kb on + strand, within RR42_RS04355 at 969.195 kb on - strand, within RR42_RS04355 at 969.195 kb on - strand, within RR42_RS04355 at 969.195 kb on - strand, within RR42_RS04355 at 969.212 kb on + strand, within RR42_RS04355 at 969.213 kb on - strand, within RR42_RS04355 at 969.213 kb on - strand, within RR42_RS04355 at 969.213 kb on - strand, within RR42_RS04355 at 969.213 kb on - strand, within RR42_RS04355 at 969.213 kb on - strand, within RR42_RS04355 at 969.245 kb on + strand, within RR42_RS04355 at 969.246 kb on - strand, within RR42_RS04355 at 969.398 kb on + strand at 969.398 kb on + strand at 969.398 kb on + strand at 969.398 kb on + strand at 969.398 kb on + strand at 969.399 kb on - strand at 969.399 kb on - strand at 969.501 kb on + strand at 969.501 kb on + strand at 969.502 kb on - strand at 969.502 kb on - strand at 971.284 kb on - strand at 971.284 kb on - strand at 971.380 kb on + strand, within RR42_RS04370 at 971.380 kb on + strand, within RR42_RS04370 at 971.407 kb on + strand, within RR42_RS04370 at 971.408 kb on - strand, within RR42_RS04370 at 971.422 kb on + strand, within RR42_RS04370 at 971.476 kb on + strand, within RR42_RS04370 at 971.476 kb on + strand at 971.476 kb on + strand, within RR42_RS04370 at 971.476 kb on + strand, within RR42_RS04370 at 971.476 kb on + strand, within RR42_RS04370 at 971.476 kb on + strand, within RR42_RS04370 at 971.477 kb on - strand, within RR42_RS04370 at 971.477 kb on - strand, within RR42_RS04370 at 971.477 kb on - strand, within RR42_RS04370 at 971.477 kb on - strand, within RR42_RS04370 at 971.647 kb on + strand, within RR42_RS04370 at 971.647 kb on + strand, within RR42_RS04370 at 971.668 kb on + strand, within RR42_RS04370 at 971.669 kb on - strand, within RR42_RS04370 at 971.773 kb on + strand, within RR42_RS04370 at 971.774 kb on - strand, within RR42_RS04370 at 971.774 kb on - strand, within RR42_RS04370 at 971.774 kb on - strand, within RR42_RS04370
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Paraquat dichloride 0.064 mg/ml remove 968,765 + RR42_RS04355 0.54 -0.2 968,765 + RR42_RS04355 0.54 -1.0 968,825 + RR42_RS04355 0.58 +1.0 968,825 + RR42_RS04355 0.58 -0.5 968,826 - RR42_RS04355 0.58 -1.5 968,960 + RR42_RS04355 0.68 -0.9 969,014 + RR42_RS04355 0.72 -0.7 969,047 + RR42_RS04355 0.74 -0.8 969,057 - RR42_RS04355 0.75 +1.0 969,057 - RR42_RS04355 0.75 +0.1 969,194 + RR42_RS04355 0.85 -0.6 969,194 + RR42_RS04355 0.85 -1.1 969,195 - RR42_RS04355 0.85 +0.1 969,195 - RR42_RS04355 0.85 -0.1 969,195 - RR42_RS04355 0.85 -0.2 969,212 + RR42_RS04355 0.86 +1.0 969,213 - RR42_RS04355 0.86 -0.5 969,213 - RR42_RS04355 0.86 -0.3 969,213 - RR42_RS04355 0.86 -0.2 969,213 - RR42_RS04355 0.86 +1.1 969,213 - RR42_RS04355 0.86 +0.0 969,245 + RR42_RS04355 0.89 -0.1 969,246 - RR42_RS04355 0.89 -1.4 969,398 + +0.3 969,398 + +0.9 969,398 + -0.2 969,398 + +0.6 969,398 + +0.8 969,399 - -0.7 969,399 - -1.3 969,501 + +0.5 969,501 + -0.2 969,502 - -1.7 969,502 - +0.2 971,284 - +0.3 971,284 - +1.0 971,380 + RR42_RS04370 0.10 -0.6 971,380 + RR42_RS04370 0.10 -2.3 971,407 + RR42_RS04370 0.13 -1.0 971,408 - RR42_RS04370 0.13 +0.6 971,422 + RR42_RS04370 0.15 -1.2 971,476 + RR42_RS04370 0.21 -0.6 971,476 + +0.8 971,476 + RR42_RS04370 0.21 +0.6 971,476 + RR42_RS04370 0.21 -0.0 971,476 + RR42_RS04370 0.21 +0.3 971,476 + RR42_RS04370 0.21 -0.0 971,477 - RR42_RS04370 0.21 +1.2 971,477 - RR42_RS04370 0.21 -2.0 971,477 - RR42_RS04370 0.21 +1.2 971,477 - RR42_RS04370 0.21 +0.0 971,647 + RR42_RS04370 0.40 +1.3 971,647 + RR42_RS04370 0.40 -0.0 971,668 + RR42_RS04370 0.42 +0.8 971,669 - RR42_RS04370 0.42 -0.8 971,773 + RR42_RS04370 0.54 +1.1 971,774 - RR42_RS04370 0.54 +0.5 971,774 - RR42_RS04370 0.54 -0.4 971,774 - RR42_RS04370 0.54 +0.5
Or see this region's nucleotide sequence