Experiment: R2A with Paraquat dichloride 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS04350 and RR42_RS04355 are separated by 116 nucleotides RR42_RS04355 and RR42_RS04360 are separated by 157 nucleotides
RR42_RS04350: RR42_RS04350 - ABC transporter ATP-binding protein, at 966,855 to 967,916
_RS04350
RR42_RS04355: RR42_RS04355 - recombination factor protein RarA, at 968,033 to 969,400
_RS04355
RR42_RS04360: RR42_RS04360 - seryl-tRNA synthetase, at 969,558 to 970,871
_RS04360
Position (kb) 968
969
970 Strain fitness (log2 ratio) -1
0
1
2 at 967.132 kb on - strand, within RR42_RS04350 at 967.132 kb on - strand, within RR42_RS04350 at 967.532 kb on + strand, within RR42_RS04350 at 967.532 kb on + strand, within RR42_RS04350 at 967.539 kb on + strand, within RR42_RS04350 at 967.649 kb on + strand, within RR42_RS04350 at 967.649 kb on + strand, within RR42_RS04350 at 967.650 kb on - strand, within RR42_RS04350 at 967.650 kb on - strand, within RR42_RS04350 at 967.789 kb on - strand, within RR42_RS04350 at 967.949 kb on + strand at 967.949 kb on + strand at 967.950 kb on - strand at 967.950 kb on - strand at 967.950 kb on - strand at 968.005 kb on + strand at 968.006 kb on - strand at 968.017 kb on + strand at 968.325 kb on - strand, within RR42_RS04355 at 968.502 kb on - strand, within RR42_RS04355 at 968.502 kb on - strand, within RR42_RS04355 at 968.765 kb on + strand, within RR42_RS04355 at 968.765 kb on + strand, within RR42_RS04355 at 968.825 kb on + strand, within RR42_RS04355 at 968.825 kb on + strand, within RR42_RS04355 at 968.826 kb on - strand, within RR42_RS04355 at 968.960 kb on + strand, within RR42_RS04355 at 969.014 kb on + strand, within RR42_RS04355 at 969.047 kb on + strand, within RR42_RS04355 at 969.057 kb on - strand, within RR42_RS04355 at 969.057 kb on - strand, within RR42_RS04355 at 969.194 kb on + strand, within RR42_RS04355 at 969.194 kb on + strand, within RR42_RS04355 at 969.195 kb on - strand, within RR42_RS04355 at 969.195 kb on - strand, within RR42_RS04355 at 969.195 kb on - strand, within RR42_RS04355 at 969.212 kb on + strand, within RR42_RS04355 at 969.213 kb on - strand, within RR42_RS04355 at 969.213 kb on - strand, within RR42_RS04355 at 969.213 kb on - strand, within RR42_RS04355 at 969.213 kb on - strand, within RR42_RS04355 at 969.213 kb on - strand, within RR42_RS04355 at 969.245 kb on + strand, within RR42_RS04355 at 969.246 kb on - strand, within RR42_RS04355 at 969.398 kb on + strand at 969.398 kb on + strand at 969.398 kb on + strand at 969.398 kb on + strand at 969.398 kb on + strand at 969.399 kb on - strand at 969.399 kb on - strand at 969.501 kb on + strand at 969.501 kb on + strand at 969.502 kb on - strand at 969.502 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Paraquat dichloride 0.064 mg/ml remove 967,132 - RR42_RS04350 0.26 +0.0 967,132 - RR42_RS04350 0.26 +0.3 967,532 + RR42_RS04350 0.64 +0.7 967,532 + RR42_RS04350 0.64 +0.3 967,539 + RR42_RS04350 0.64 +0.8 967,649 + RR42_RS04350 0.75 +1.9 967,649 + RR42_RS04350 0.75 +0.3 967,650 - RR42_RS04350 0.75 +2.3 967,650 - RR42_RS04350 0.75 +0.1 967,789 - RR42_RS04350 0.88 +0.8 967,949 + +1.8 967,949 + -0.3 967,950 - -0.8 967,950 - +1.8 967,950 - +0.4 968,005 + -1.7 968,006 - +1.6 968,017 + +0.1 968,325 - RR42_RS04355 0.21 +1.3 968,502 - RR42_RS04355 0.34 -1.2 968,502 - RR42_RS04355 0.34 -0.5 968,765 + RR42_RS04355 0.54 -0.2 968,765 + RR42_RS04355 0.54 -1.0 968,825 + RR42_RS04355 0.58 +1.0 968,825 + RR42_RS04355 0.58 -0.5 968,826 - RR42_RS04355 0.58 -1.5 968,960 + RR42_RS04355 0.68 -0.9 969,014 + RR42_RS04355 0.72 -0.7 969,047 + RR42_RS04355 0.74 -0.8 969,057 - RR42_RS04355 0.75 +1.0 969,057 - RR42_RS04355 0.75 +0.1 969,194 + RR42_RS04355 0.85 -0.6 969,194 + RR42_RS04355 0.85 -1.1 969,195 - RR42_RS04355 0.85 +0.1 969,195 - RR42_RS04355 0.85 -0.1 969,195 - RR42_RS04355 0.85 -0.2 969,212 + RR42_RS04355 0.86 +1.0 969,213 - RR42_RS04355 0.86 -0.5 969,213 - RR42_RS04355 0.86 -0.3 969,213 - RR42_RS04355 0.86 -0.2 969,213 - RR42_RS04355 0.86 +1.1 969,213 - RR42_RS04355 0.86 +0.0 969,245 + RR42_RS04355 0.89 -0.1 969,246 - RR42_RS04355 0.89 -1.4 969,398 + +0.3 969,398 + +0.9 969,398 + -0.2 969,398 + +0.6 969,398 + +0.8 969,399 - -0.7 969,399 - -1.3 969,501 + +0.5 969,501 + -0.2 969,502 - -1.7 969,502 - +0.2
Or see this region's nucleotide sequence