Experiment: R2A with Paraquat dichloride 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS04280 and RR42_RS04285 are separated by 189 nucleotides RR42_RS04285 and RR42_RS04290 are separated by 180 nucleotides RR42_RS04290 and RR42_RS04295 are separated by 29 nucleotides
RR42_RS04280: RR42_RS04280 - aldehyde dehydrogenase, at 951,613 to 953,049
_RS04280
RR42_RS04285: RR42_RS04285 - inorganic pyrophosphatase, at 953,239 to 953,766
_RS04285
RR42_RS04290: RR42_RS04290 - cytochrome B561, at 953,947 to 954,501
_RS04290
RR42_RS04295: RR42_RS04295 - hypothetical protein, at 954,531 to 955,790
_RS04295
Position (kb) 953
954
955 Strain fitness (log2 ratio) -1
0
1
2 at 952.984 kb on + strand at 952.984 kb on + strand at 953.054 kb on + strand at 953.195 kb on + strand at 953.195 kb on + strand at 953.196 kb on - strand at 953.196 kb on - strand at 953.764 kb on + strand at 953.764 kb on + strand at 953.765 kb on - strand at 953.886 kb on + strand at 953.900 kb on + strand at 953.939 kb on + strand at 953.939 kb on + strand at 953.955 kb on + strand at 953.955 kb on + strand at 953.955 kb on + strand at 953.986 kb on + strand at 954.020 kb on + strand, within RR42_RS04290 at 954.020 kb on + strand, within RR42_RS04290 at 954.021 kb on - strand, within RR42_RS04290 at 954.021 kb on - strand, within RR42_RS04290 at 954.043 kb on + strand, within RR42_RS04290 at 954.242 kb on + strand, within RR42_RS04290 at 954.242 kb on + strand, within RR42_RS04290 at 954.242 kb on + strand, within RR42_RS04290 at 954.243 kb on - strand, within RR42_RS04290 at 954.247 kb on + strand, within RR42_RS04290 at 954.247 kb on + strand, within RR42_RS04290 at 954.248 kb on - strand, within RR42_RS04290 at 954.257 kb on + strand, within RR42_RS04290 at 954.415 kb on + strand, within RR42_RS04290 at 954.415 kb on + strand, within RR42_RS04290 at 954.415 kb on + strand, within RR42_RS04290 at 954.415 kb on + strand, within RR42_RS04290 at 954.415 kb on + strand, within RR42_RS04290 at 954.415 kb on + strand, within RR42_RS04290 at 954.415 kb on + strand, within RR42_RS04290 at 954.416 kb on - strand, within RR42_RS04290 at 954.460 kb on + strand at 954.460 kb on + strand at 954.460 kb on + strand at 954.461 kb on - strand at 954.461 kb on - strand at 954.461 kb on - strand at 954.475 kb on - strand at 954.499 kb on + strand at 954.574 kb on + strand at 954.723 kb on - strand, within RR42_RS04295 at 954.760 kb on + strand, within RR42_RS04295 at 954.761 kb on - strand, within RR42_RS04295 at 954.763 kb on + strand, within RR42_RS04295 at 954.764 kb on - strand, within RR42_RS04295 at 954.764 kb on - strand, within RR42_RS04295 at 954.764 kb on - strand, within RR42_RS04295 at 954.764 kb on - strand, within RR42_RS04295 at 954.764 kb on - strand, within RR42_RS04295 at 954.812 kb on - strand, within RR42_RS04295 at 954.851 kb on - strand, within RR42_RS04295 at 954.851 kb on - strand, within RR42_RS04295 at 954.995 kb on - strand, within RR42_RS04295 at 955.385 kb on - strand, within RR42_RS04295 at 955.406 kb on - strand, within RR42_RS04295 at 955.406 kb on - strand, within RR42_RS04295 at 955.435 kb on + strand, within RR42_RS04295 at 955.435 kb on + strand, within RR42_RS04295 at 955.436 kb on - strand, within RR42_RS04295 at 955.436 kb on - strand, within RR42_RS04295 at 955.436 kb on - strand, within RR42_RS04295 at 955.436 kb on - strand, within RR42_RS04295
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Paraquat dichloride 0.064 mg/ml remove 952,984 + -0.2 952,984 + +1.6 953,054 + +1.0 953,195 + +0.2 953,195 + +0.2 953,196 - -1.1 953,196 - -0.8 953,764 + +1.2 953,764 + +0.6 953,765 - -1.7 953,886 + +0.0 953,900 + +0.9 953,939 + -0.1 953,939 + +0.6 953,955 + -0.2 953,955 + +0.2 953,955 + +0.9 953,986 + -0.6 954,020 + RR42_RS04290 0.13 +0.2 954,020 + RR42_RS04290 0.13 -1.4 954,021 - RR42_RS04290 0.13 -0.2 954,021 - RR42_RS04290 0.13 -0.7 954,043 + RR42_RS04290 0.17 +2.3 954,242 + RR42_RS04290 0.53 -0.8 954,242 + RR42_RS04290 0.53 -0.8 954,242 + RR42_RS04290 0.53 +0.3 954,243 - RR42_RS04290 0.53 -0.1 954,247 + RR42_RS04290 0.54 -0.5 954,247 + RR42_RS04290 0.54 -0.3 954,248 - RR42_RS04290 0.54 +0.3 954,257 + RR42_RS04290 0.56 +0.3 954,415 + RR42_RS04290 0.84 +0.5 954,415 + RR42_RS04290 0.84 +0.8 954,415 + RR42_RS04290 0.84 -0.5 954,415 + RR42_RS04290 0.84 -1.2 954,415 + RR42_RS04290 0.84 +0.1 954,415 + RR42_RS04290 0.84 -1.0 954,415 + RR42_RS04290 0.84 +1.0 954,416 - RR42_RS04290 0.85 -0.5 954,460 + +2.3 954,460 + +1.2 954,460 + +0.7 954,461 - -0.5 954,461 - -0.3 954,461 - +0.8 954,475 - -0.7 954,499 + -0.3 954,574 + +1.1 954,723 - RR42_RS04295 0.15 +0.8 954,760 + RR42_RS04295 0.18 +0.9 954,761 - RR42_RS04295 0.18 -0.3 954,763 + RR42_RS04295 0.18 +0.8 954,764 - RR42_RS04295 0.18 -0.2 954,764 - RR42_RS04295 0.18 +1.3 954,764 - RR42_RS04295 0.18 -1.2 954,764 - RR42_RS04295 0.18 +0.2 954,764 - RR42_RS04295 0.18 +0.2 954,812 - RR42_RS04295 0.22 -0.4 954,851 - RR42_RS04295 0.25 +0.7 954,851 - RR42_RS04295 0.25 +1.2 954,995 - RR42_RS04295 0.37 -0.8 955,385 - RR42_RS04295 0.68 +1.5 955,406 - RR42_RS04295 0.69 +0.0 955,406 - RR42_RS04295 0.69 +1.2 955,435 + RR42_RS04295 0.72 +0.7 955,435 + RR42_RS04295 0.72 -0.1 955,436 - RR42_RS04295 0.72 +1.0 955,436 - RR42_RS04295 0.72 +1.8 955,436 - RR42_RS04295 0.72 +1.2 955,436 - RR42_RS04295 0.72 +0.1
Or see this region's nucleotide sequence