Experiment: R2A with Paraquat dichloride 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS04270 and RR42_RS04275 are separated by 116 nucleotides RR42_RS04275 and RR42_RS04280 overlap by 8 nucleotides RR42_RS04280 and RR42_RS04285 are separated by 189 nucleotides RR42_RS04285 and RR42_RS04290 are separated by 180 nucleotides
RR42_RS04270: RR42_RS04270 - MFS transporter, at 949,957 to 951,261
_RS04270
RR42_RS04275: RR42_RS04275 - hypothetical protein, at 951,378 to 951,620
_RS04275
RR42_RS04280: RR42_RS04280 - aldehyde dehydrogenase, at 951,613 to 953,049
_RS04280
RR42_RS04285: RR42_RS04285 - inorganic pyrophosphatase, at 953,239 to 953,766
_RS04285
RR42_RS04290: RR42_RS04290 - cytochrome B561, at 953,947 to 954,501
_RS04290
Position (kb) 951
952
953
954 Strain fitness (log2 ratio) -2
-1
0
1
2 at 950.841 kb on - strand, within RR42_RS04270 at 950.910 kb on - strand, within RR42_RS04270 at 950.910 kb on - strand, within RR42_RS04270 at 950.910 kb on - strand, within RR42_RS04270 at 950.910 kb on - strand, within RR42_RS04270 at 950.910 kb on - strand, within RR42_RS04270 at 951.042 kb on - strand, within RR42_RS04270 at 951.074 kb on + strand, within RR42_RS04270 at 951.158 kb on + strand at 951.159 kb on - strand at 951.203 kb on + strand at 951.203 kb on + strand at 951.204 kb on - strand at 951.244 kb on + strand at 951.244 kb on + strand at 951.245 kb on - strand at 951.288 kb on + strand at 951.288 kb on + strand at 951.289 kb on - strand at 951.289 kb on - strand at 951.455 kb on - strand, within RR42_RS04275 at 951.611 kb on + strand at 951.611 kb on + strand at 951.612 kb on - strand at 951.614 kb on + strand at 951.615 kb on - strand at 951.615 kb on - strand at 951.687 kb on - strand at 951.715 kb on + strand at 951.721 kb on + strand at 951.740 kb on + strand at 951.740 kb on + strand at 951.740 kb on + strand at 951.969 kb on - strand, within RR42_RS04280 at 952.659 kb on + strand, within RR42_RS04280 at 952.716 kb on - strand, within RR42_RS04280 at 952.716 kb on - strand, within RR42_RS04280 at 952.984 kb on + strand at 952.984 kb on + strand at 953.054 kb on + strand at 953.195 kb on + strand at 953.195 kb on + strand at 953.196 kb on - strand at 953.196 kb on - strand at 953.764 kb on + strand at 953.764 kb on + strand at 953.765 kb on - strand at 953.886 kb on + strand at 953.900 kb on + strand at 953.939 kb on + strand at 953.939 kb on + strand at 953.955 kb on + strand at 953.955 kb on + strand at 953.955 kb on + strand at 953.986 kb on + strand at 954.020 kb on + strand, within RR42_RS04290 at 954.020 kb on + strand, within RR42_RS04290 at 954.021 kb on - strand, within RR42_RS04290 at 954.021 kb on - strand, within RR42_RS04290 at 954.043 kb on + strand, within RR42_RS04290
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Paraquat dichloride 0.064 mg/ml remove 950,841 - RR42_RS04270 0.68 +0.0 950,910 - RR42_RS04270 0.73 +1.0 950,910 - RR42_RS04270 0.73 +0.0 950,910 - RR42_RS04270 0.73 +0.8 950,910 - RR42_RS04270 0.73 -0.5 950,910 - RR42_RS04270 0.73 +0.5 951,042 - RR42_RS04270 0.83 +0.4 951,074 + RR42_RS04270 0.86 -1.4 951,158 + +0.3 951,159 - -0.8 951,203 + -2.3 951,203 + -0.3 951,204 - -0.1 951,244 + +0.5 951,244 + -0.1 951,245 - +0.3 951,288 + -0.2 951,288 + -0.9 951,289 - -2.4 951,289 - -1.6 951,455 - RR42_RS04275 0.32 +0.5 951,611 + -0.8 951,611 + -0.6 951,612 - +2.6 951,614 + -0.9 951,615 - -0.9 951,615 - -0.6 951,687 - +0.8 951,715 + -0.2 951,721 + -0.5 951,740 + -0.4 951,740 + +1.5 951,740 + +0.6 951,969 - RR42_RS04280 0.25 -0.9 952,659 + RR42_RS04280 0.73 +1.6 952,716 - RR42_RS04280 0.77 +0.0 952,716 - RR42_RS04280 0.77 +0.4 952,984 + -0.2 952,984 + +1.6 953,054 + +1.0 953,195 + +0.2 953,195 + +0.2 953,196 - -1.1 953,196 - -0.8 953,764 + +1.2 953,764 + +0.6 953,765 - -1.7 953,886 + +0.0 953,900 + +0.9 953,939 + -0.1 953,939 + +0.6 953,955 + -0.2 953,955 + +0.2 953,955 + +0.9 953,986 + -0.6 954,020 + RR42_RS04290 0.13 +0.2 954,020 + RR42_RS04290 0.13 -1.4 954,021 - RR42_RS04290 0.13 -0.2 954,021 - RR42_RS04290 0.13 -0.7 954,043 + RR42_RS04290 0.17 +2.3
Or see this region's nucleotide sequence