Experiment: R2A with Paraquat dichloride 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS04195 and RR42_RS04200 are separated by 67 nucleotides RR42_RS04200 and RR42_RS04205 are separated by 66 nucleotides
RR42_RS04195: RR42_RS04195 - membrane protein, at 928,564 to 929,661
_RS04195
RR42_RS04200: RR42_RS04200 - peptidase M48, at 929,729 to 930,889
_RS04200
RR42_RS04205: RR42_RS04205 - glycine cleavage system regulatory protein, at 930,956 to 931,843
_RS04205
Position (kb) 929
930
931 Strain fitness (log2 ratio) -2
-1
0
1
2 at 928.750 kb on + strand, within RR42_RS04195 at 928.751 kb on - strand, within RR42_RS04195 at 928.751 kb on - strand, within RR42_RS04195 at 928.757 kb on - strand, within RR42_RS04195 at 928.793 kb on - strand, within RR42_RS04195 at 928.873 kb on - strand, within RR42_RS04195 at 928.973 kb on - strand, within RR42_RS04195 at 928.973 kb on - strand, within RR42_RS04195 at 929.017 kb on + strand, within RR42_RS04195 at 929.017 kb on + strand, within RR42_RS04195 at 929.017 kb on + strand, within RR42_RS04195 at 929.017 kb on + strand, within RR42_RS04195 at 929.017 kb on + strand, within RR42_RS04195 at 929.018 kb on - strand, within RR42_RS04195 at 929.062 kb on + strand, within RR42_RS04195 at 929.062 kb on + strand, within RR42_RS04195 at 929.062 kb on + strand, within RR42_RS04195 at 929.062 kb on + strand, within RR42_RS04195 at 929.102 kb on - strand, within RR42_RS04195 at 929.102 kb on - strand, within RR42_RS04195 at 929.167 kb on + strand, within RR42_RS04195 at 929.168 kb on - strand, within RR42_RS04195 at 929.168 kb on - strand, within RR42_RS04195 at 929.168 kb on - strand, within RR42_RS04195 at 929.176 kb on + strand, within RR42_RS04195 at 929.454 kb on + strand, within RR42_RS04195 at 929.455 kb on - strand, within RR42_RS04195 at 929.455 kb on - strand, within RR42_RS04195 at 929.455 kb on - strand, within RR42_RS04195 at 929.538 kb on + strand, within RR42_RS04195 at 929.638 kb on + strand at 929.639 kb on - strand at 929.639 kb on - strand at 929.674 kb on + strand at 929.675 kb on - strand at 929.768 kb on + strand at 930.086 kb on + strand, within RR42_RS04200 at 930.092 kb on + strand, within RR42_RS04200 at 930.092 kb on + strand, within RR42_RS04200 at 930.093 kb on - strand, within RR42_RS04200 at 930.509 kb on + strand, within RR42_RS04200 at 930.590 kb on + strand, within RR42_RS04200 at 930.591 kb on - strand, within RR42_RS04200 at 930.887 kb on + strand at 930.887 kb on + strand at 930.887 kb on + strand at 930.888 kb on - strand at 930.888 kb on - strand at 930.888 kb on - strand at 930.888 kb on - strand at 930.910 kb on + strand at 930.910 kb on + strand at 930.910 kb on + strand at 930.910 kb on + strand at 930.911 kb on - strand at 930.911 kb on - strand at 930.911 kb on - strand at 930.976 kb on + strand at 930.976 kb on + strand at 930.977 kb on - strand at 930.977 kb on - strand at 930.977 kb on - strand at 931.032 kb on + strand at 931.033 kb on - strand at 931.033 kb on - strand at 931.093 kb on - strand, within RR42_RS04205 at 931.093 kb on - strand, within RR42_RS04205 at 931.093 kb on - strand, within RR42_RS04205 at 931.411 kb on - strand, within RR42_RS04205
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Paraquat dichloride 0.064 mg/ml remove 928,750 + RR42_RS04195 0.17 +0.1 928,751 - RR42_RS04195 0.17 -0.5 928,751 - RR42_RS04195 0.17 -1.9 928,757 - RR42_RS04195 0.18 -2.0 928,793 - RR42_RS04195 0.21 +0.0 928,873 - RR42_RS04195 0.28 -1.8 928,973 - RR42_RS04195 0.37 -0.7 928,973 - RR42_RS04195 0.37 -1.0 929,017 + RR42_RS04195 0.41 -0.3 929,017 + RR42_RS04195 0.41 -0.6 929,017 + RR42_RS04195 0.41 -0.2 929,017 + RR42_RS04195 0.41 -1.6 929,017 + RR42_RS04195 0.41 +0.0 929,018 - RR42_RS04195 0.41 -1.6 929,062 + RR42_RS04195 0.45 -0.7 929,062 + RR42_RS04195 0.45 -1.5 929,062 + RR42_RS04195 0.45 -1.8 929,062 + RR42_RS04195 0.45 -0.2 929,102 - RR42_RS04195 0.49 -0.6 929,102 - RR42_RS04195 0.49 +0.4 929,167 + RR42_RS04195 0.55 -0.6 929,168 - RR42_RS04195 0.55 +0.1 929,168 - RR42_RS04195 0.55 -0.4 929,168 - RR42_RS04195 0.55 -0.0 929,176 + RR42_RS04195 0.56 -0.5 929,454 + RR42_RS04195 0.81 -1.1 929,455 - RR42_RS04195 0.81 -0.9 929,455 - RR42_RS04195 0.81 +0.4 929,455 - RR42_RS04195 0.81 +0.4 929,538 + RR42_RS04195 0.89 -0.3 929,638 + -0.8 929,639 - -0.5 929,639 - -0.1 929,674 + -1.1 929,675 - -0.5 929,768 + -0.2 930,086 + RR42_RS04200 0.31 +0.8 930,092 + RR42_RS04200 0.31 -0.2 930,092 + RR42_RS04200 0.31 -1.7 930,093 - RR42_RS04200 0.31 +0.1 930,509 + RR42_RS04200 0.67 -0.4 930,590 + RR42_RS04200 0.74 +1.4 930,591 - RR42_RS04200 0.74 +0.4 930,887 + -0.6 930,887 + +0.3 930,887 + +0.0 930,888 - -0.7 930,888 - +0.4 930,888 - -1.2 930,888 - -0.1 930,910 + -0.4 930,910 + -0.1 930,910 + +0.9 930,910 + +1.0 930,911 - +0.4 930,911 - -0.4 930,911 - +0.0 930,976 + -1.2 930,976 + +1.9 930,977 - +1.0 930,977 - +0.8 930,977 - +0.8 931,032 + -0.6 931,033 - +0.0 931,033 - -0.1 931,093 - RR42_RS04205 0.15 -1.0 931,093 - RR42_RS04205 0.15 -1.2 931,093 - RR42_RS04205 0.15 +0.4 931,411 - RR42_RS04205 0.51 +2.4
Or see this region's nucleotide sequence