Experiment: R2A with Paraquat dichloride 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS04195 and RR42_RS04200 are separated by 67 nucleotides
RR42_RS04195: RR42_RS04195 - membrane protein, at 928,564 to 929,661
_RS04195
RR42_RS04200: RR42_RS04200 - peptidase M48, at 929,729 to 930,889
_RS04200
Position (kb) 928
929
930 Strain fitness (log2 ratio) -2
-1
0
1
2 at 927.583 kb on - strand at 927.651 kb on - strand at 927.680 kb on + strand at 927.793 kb on - strand at 927.854 kb on + strand at 927.854 kb on + strand at 927.854 kb on + strand at 927.854 kb on + strand at 927.855 kb on - strand at 927.855 kb on - strand at 927.855 kb on - strand at 927.934 kb on - strand at 927.975 kb on - strand at 928.128 kb on - strand at 928.128 kb on - strand at 928.130 kb on + strand at 928.130 kb on + strand at 928.130 kb on + strand at 928.131 kb on - strand at 928.131 kb on - strand at 928.131 kb on - strand at 928.131 kb on - strand at 928.131 kb on - strand at 928.131 kb on - strand at 928.131 kb on - strand at 928.131 kb on - strand at 928.157 kb on + strand at 928.158 kb on - strand at 928.171 kb on + strand at 928.172 kb on - strand at 928.225 kb on + strand at 928.225 kb on + strand at 928.225 kb on + strand at 928.255 kb on + strand at 928.255 kb on + strand at 928.256 kb on - strand at 928.256 kb on - strand at 928.256 kb on - strand at 928.293 kb on + strand at 928.294 kb on - strand at 928.334 kb on - strand at 928.341 kb on + strand at 928.342 kb on - strand at 928.432 kb on - strand at 928.457 kb on + strand at 928.457 kb on + strand at 928.457 kb on + strand at 928.457 kb on + strand at 928.457 kb on + strand at 928.458 kb on - strand at 928.571 kb on + strand at 928.600 kb on + strand at 928.600 kb on + strand at 928.601 kb on - strand at 928.601 kb on - strand at 928.601 kb on - strand at 928.601 kb on - strand at 928.686 kb on + strand, within RR42_RS04195 at 928.686 kb on + strand, within RR42_RS04195 at 928.687 kb on - strand, within RR42_RS04195 at 928.687 kb on - strand, within RR42_RS04195 at 928.687 kb on - strand, within RR42_RS04195 at 928.687 kb on - strand, within RR42_RS04195 at 928.687 kb on - strand, within RR42_RS04195 at 928.717 kb on + strand, within RR42_RS04195 at 928.717 kb on + strand, within RR42_RS04195 at 928.717 kb on + strand, within RR42_RS04195 at 928.717 kb on + strand, within RR42_RS04195 at 928.718 kb on - strand, within RR42_RS04195 at 928.718 kb on - strand, within RR42_RS04195 at 928.750 kb on + strand, within RR42_RS04195 at 928.751 kb on - strand, within RR42_RS04195 at 928.751 kb on - strand, within RR42_RS04195 at 928.757 kb on - strand, within RR42_RS04195 at 928.793 kb on - strand, within RR42_RS04195 at 928.873 kb on - strand, within RR42_RS04195 at 928.973 kb on - strand, within RR42_RS04195 at 928.973 kb on - strand, within RR42_RS04195 at 929.017 kb on + strand, within RR42_RS04195 at 929.017 kb on + strand, within RR42_RS04195 at 929.017 kb on + strand, within RR42_RS04195 at 929.017 kb on + strand, within RR42_RS04195 at 929.017 kb on + strand, within RR42_RS04195 at 929.018 kb on - strand, within RR42_RS04195 at 929.062 kb on + strand, within RR42_RS04195 at 929.062 kb on + strand, within RR42_RS04195 at 929.062 kb on + strand, within RR42_RS04195 at 929.062 kb on + strand, within RR42_RS04195 at 929.102 kb on - strand, within RR42_RS04195 at 929.102 kb on - strand, within RR42_RS04195 at 929.167 kb on + strand, within RR42_RS04195 at 929.168 kb on - strand, within RR42_RS04195 at 929.168 kb on - strand, within RR42_RS04195 at 929.168 kb on - strand, within RR42_RS04195 at 929.176 kb on + strand, within RR42_RS04195 at 929.454 kb on + strand, within RR42_RS04195 at 929.455 kb on - strand, within RR42_RS04195 at 929.455 kb on - strand, within RR42_RS04195 at 929.455 kb on - strand, within RR42_RS04195 at 929.538 kb on + strand, within RR42_RS04195 at 929.638 kb on + strand at 929.639 kb on - strand at 929.639 kb on - strand at 929.674 kb on + strand at 929.675 kb on - strand at 929.768 kb on + strand at 930.086 kb on + strand, within RR42_RS04200 at 930.092 kb on + strand, within RR42_RS04200 at 930.092 kb on + strand, within RR42_RS04200 at 930.093 kb on - strand, within RR42_RS04200 at 930.509 kb on + strand, within RR42_RS04200 at 930.590 kb on + strand, within RR42_RS04200 at 930.591 kb on - strand, within RR42_RS04200
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Paraquat dichloride 0.064 mg/ml remove 927,583 - +0.5 927,651 - +0.2 927,680 + -1.0 927,793 - -0.1 927,854 + +0.5 927,854 + -0.2 927,854 + -0.6 927,854 + -0.5 927,855 - +0.4 927,855 - -0.3 927,855 - +0.4 927,934 - +2.4 927,975 - -1.2 928,128 - +0.0 928,128 - -0.3 928,130 + +0.2 928,130 + -2.0 928,130 + -1.6 928,131 - +0.1 928,131 - -1.7 928,131 - -1.6 928,131 - -0.6 928,131 - +0.6 928,131 - -0.6 928,131 - -1.2 928,131 - +0.4 928,157 + -0.2 928,158 - -0.2 928,171 + -0.2 928,172 - -2.1 928,225 + -1.2 928,225 + -0.8 928,225 + -1.1 928,255 + +0.4 928,255 + +1.4 928,256 - +0.0 928,256 - +0.5 928,256 - +0.5 928,293 + -0.9 928,294 - -0.9 928,334 - +0.3 928,341 + +0.9 928,342 - -1.7 928,432 - -1.3 928,457 + -0.5 928,457 + -1.5 928,457 + +0.0 928,457 + +0.5 928,457 + -0.5 928,458 - -1.8 928,571 + +1.0 928,600 + -0.1 928,600 + +0.2 928,601 - -2.1 928,601 - +0.8 928,601 - -0.6 928,601 - -0.2 928,686 + RR42_RS04195 0.11 -1.2 928,686 + RR42_RS04195 0.11 -0.1 928,687 - RR42_RS04195 0.11 -0.4 928,687 - RR42_RS04195 0.11 -1.1 928,687 - RR42_RS04195 0.11 -0.5 928,687 - RR42_RS04195 0.11 +0.8 928,687 - RR42_RS04195 0.11 +0.4 928,717 + RR42_RS04195 0.14 +0.0 928,717 + RR42_RS04195 0.14 -2.2 928,717 + RR42_RS04195 0.14 -0.6 928,717 + RR42_RS04195 0.14 -0.6 928,718 - RR42_RS04195 0.14 +1.1 928,718 - RR42_RS04195 0.14 +1.2 928,750 + RR42_RS04195 0.17 +0.1 928,751 - RR42_RS04195 0.17 -0.5 928,751 - RR42_RS04195 0.17 -1.9 928,757 - RR42_RS04195 0.18 -2.0 928,793 - RR42_RS04195 0.21 +0.0 928,873 - RR42_RS04195 0.28 -1.8 928,973 - RR42_RS04195 0.37 -0.7 928,973 - RR42_RS04195 0.37 -1.0 929,017 + RR42_RS04195 0.41 -0.3 929,017 + RR42_RS04195 0.41 -0.6 929,017 + RR42_RS04195 0.41 -0.2 929,017 + RR42_RS04195 0.41 -1.6 929,017 + RR42_RS04195 0.41 +0.0 929,018 - RR42_RS04195 0.41 -1.6 929,062 + RR42_RS04195 0.45 -0.7 929,062 + RR42_RS04195 0.45 -1.5 929,062 + RR42_RS04195 0.45 -1.8 929,062 + RR42_RS04195 0.45 -0.2 929,102 - RR42_RS04195 0.49 -0.6 929,102 - RR42_RS04195 0.49 +0.4 929,167 + RR42_RS04195 0.55 -0.6 929,168 - RR42_RS04195 0.55 +0.1 929,168 - RR42_RS04195 0.55 -0.4 929,168 - RR42_RS04195 0.55 -0.0 929,176 + RR42_RS04195 0.56 -0.5 929,454 + RR42_RS04195 0.81 -1.1 929,455 - RR42_RS04195 0.81 -0.9 929,455 - RR42_RS04195 0.81 +0.4 929,455 - RR42_RS04195 0.81 +0.4 929,538 + RR42_RS04195 0.89 -0.3 929,638 + -0.8 929,639 - -0.5 929,639 - -0.1 929,674 + -1.1 929,675 - -0.5 929,768 + -0.2 930,086 + RR42_RS04200 0.31 +0.8 930,092 + RR42_RS04200 0.31 -0.2 930,092 + RR42_RS04200 0.31 -1.7 930,093 - RR42_RS04200 0.31 +0.1 930,509 + RR42_RS04200 0.67 -0.4 930,590 + RR42_RS04200 0.74 +1.4 930,591 - RR42_RS04200 0.74 +0.4
Or see this region's nucleotide sequence