Experiment: R2A with Paraquat dichloride 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS04170 and RR42_RS04175 are separated by 20 nucleotides RR42_RS04175 and RR42_RS04180 overlap by 64 nucleotides RR42_RS04180 and RR42_RS04185 are separated by 38 nucleotides
RR42_RS04170: RR42_RS04170 - bactoprenol glucosyl transferase, at 921,597 to 922,622
_RS04170
RR42_RS04175: RR42_RS04175 - hypothetical protein, at 922,643 to 923,086
_RS04175
RR42_RS04180: RR42_RS04180 - methyltransferase, at 923,023 to 923,757
_RS04180
RR42_RS04185: RR42_RS04185 - Fis family transcriptional regulator, at 923,796 to 925,172
_RS04185
Position (kb) 922
923
924 Strain fitness (log2 ratio) -2
-1
0
1
2 at 922.029 kb on + strand, within RR42_RS04170 at 922.029 kb on + strand, within RR42_RS04170 at 922.029 kb on + strand, within RR42_RS04170 at 922.029 kb on + strand, within RR42_RS04170 at 922.033 kb on - strand, within RR42_RS04170 at 922.043 kb on + strand, within RR42_RS04170 at 922.043 kb on + strand, within RR42_RS04170 at 922.047 kb on + strand, within RR42_RS04170 at 922.048 kb on - strand, within RR42_RS04170 at 922.198 kb on - strand, within RR42_RS04170 at 922.215 kb on - strand, within RR42_RS04170 at 922.303 kb on + strand, within RR42_RS04170 at 922.311 kb on + strand, within RR42_RS04170 at 922.311 kb on + strand, within RR42_RS04170 at 922.312 kb on - strand, within RR42_RS04170 at 922.312 kb on - strand, within RR42_RS04170 at 922.362 kb on - strand, within RR42_RS04170 at 922.474 kb on - strand, within RR42_RS04170 at 922.491 kb on + strand, within RR42_RS04170 at 922.515 kb on + strand, within RR42_RS04170 at 922.516 kb on - strand, within RR42_RS04170 at 922.644 kb on + strand at 922.722 kb on + strand, within RR42_RS04175 at 922.723 kb on - strand, within RR42_RS04175 at 922.723 kb on - strand, within RR42_RS04175 at 922.723 kb on - strand, within RR42_RS04175 at 922.847 kb on - strand, within RR42_RS04175 at 922.847 kb on - strand, within RR42_RS04175 at 922.857 kb on + strand, within RR42_RS04175 at 922.991 kb on - strand, within RR42_RS04175 at 922.991 kb on - strand, within RR42_RS04175 at 923.105 kb on - strand, within RR42_RS04180 at 923.342 kb on + strand, within RR42_RS04180 at 923.741 kb on + strand at 923.741 kb on + strand at 923.772 kb on - strand at 923.772 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Paraquat dichloride 0.064 mg/ml remove 922,029 + RR42_RS04170 0.42 +0.9 922,029 + RR42_RS04170 0.42 +0.4 922,029 + RR42_RS04170 0.42 -0.1 922,029 + RR42_RS04170 0.42 -1.3 922,033 - RR42_RS04170 0.42 -1.5 922,043 + RR42_RS04170 0.43 -2.7 922,043 + RR42_RS04170 0.43 +1.4 922,047 + RR42_RS04170 0.44 +0.4 922,048 - RR42_RS04170 0.44 +0.2 922,198 - RR42_RS04170 0.59 -0.3 922,215 - RR42_RS04170 0.60 +0.9 922,303 + RR42_RS04170 0.69 -1.3 922,311 + RR42_RS04170 0.70 -1.0 922,311 + RR42_RS04170 0.70 -0.2 922,312 - RR42_RS04170 0.70 +0.4 922,312 - RR42_RS04170 0.70 -0.4 922,362 - RR42_RS04170 0.75 -0.9 922,474 - RR42_RS04170 0.85 -0.4 922,491 + RR42_RS04170 0.87 +0.6 922,515 + RR42_RS04170 0.89 +0.8 922,516 - RR42_RS04170 0.90 -1.2 922,644 + -1.3 922,722 + RR42_RS04175 0.18 -0.1 922,723 - RR42_RS04175 0.18 +2.4 922,723 - RR42_RS04175 0.18 +0.5 922,723 - RR42_RS04175 0.18 +2.1 922,847 - RR42_RS04175 0.46 +0.4 922,847 - RR42_RS04175 0.46 +0.3 922,857 + RR42_RS04175 0.48 +1.2 922,991 - RR42_RS04175 0.78 +0.6 922,991 - RR42_RS04175 0.78 +0.2 923,105 - RR42_RS04180 0.11 +0.9 923,342 + RR42_RS04180 0.43 +1.1 923,741 + -1.0 923,741 + +0.5 923,772 - +0.9 923,772 - +0.1
Or see this region's nucleotide sequence