Experiment: R2A with Paraquat dichloride 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03855 and RR42_RS03860 are separated by 324 nucleotides RR42_RS03860 and RR42_RS03865 are separated by 93 nucleotides
RR42_RS03855: RR42_RS03855 - MFS transporter, at 851,532 to 852,515
_RS03855
RR42_RS03860: RR42_RS03860 - transcriptional regulator, at 852,840 to 853,919
_RS03860
RR42_RS03865: RR42_RS03865 - hydroxyacid dehydrogenase, at 854,013 to 854,954
_RS03865
Position (kb) 852
853
854 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 851.953 kb on + strand, within RR42_RS03855 at 852.117 kb on + strand, within RR42_RS03855 at 852.178 kb on + strand, within RR42_RS03855 at 852.244 kb on + strand, within RR42_RS03855 at 852.244 kb on + strand, within RR42_RS03855 at 852.244 kb on + strand, within RR42_RS03855 at 852.271 kb on + strand, within RR42_RS03855 at 852.284 kb on + strand, within RR42_RS03855 at 852.406 kb on + strand, within RR42_RS03855 at 852.406 kb on + strand, within RR42_RS03855 at 852.407 kb on - strand, within RR42_RS03855 at 852.562 kb on - strand at 852.562 kb on - strand at 852.562 kb on - strand at 852.562 kb on - strand at 852.565 kb on + strand at 852.566 kb on - strand at 852.566 kb on - strand at 852.566 kb on - strand at 852.566 kb on - strand at 852.566 kb on - strand at 852.568 kb on + strand at 852.568 kb on + strand at 852.569 kb on - strand at 852.569 kb on - strand at 852.569 kb on - strand at 852.607 kb on + strand at 852.608 kb on - strand at 852.608 kb on - strand at 853.068 kb on + strand, within RR42_RS03860 at 853.069 kb on - strand, within RR42_RS03860 at 853.069 kb on - strand, within RR42_RS03860 at 853.076 kb on + strand, within RR42_RS03860 at 853.203 kb on + strand, within RR42_RS03860 at 853.769 kb on + strand, within RR42_RS03860 at 853.769 kb on + strand, within RR42_RS03860 at 853.770 kb on - strand, within RR42_RS03860 at 853.770 kb on - strand, within RR42_RS03860 at 853.770 kb on - strand, within RR42_RS03860 at 853.774 kb on - strand, within RR42_RS03860 at 853.963 kb on + strand at 854.031 kb on - strand at 854.083 kb on - strand at 854.245 kb on - strand, within RR42_RS03865 at 854.245 kb on - strand, within RR42_RS03865 at 854.651 kb on - strand, within RR42_RS03865 at 854.836 kb on + strand, within RR42_RS03865 at 854.836 kb on + strand, within RR42_RS03865 at 854.837 kb on - strand, within RR42_RS03865
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Paraquat dichloride 0.064 mg/ml remove 851,953 + RR42_RS03855 0.43 +0.1 852,117 + RR42_RS03855 0.59 -1.8 852,178 + RR42_RS03855 0.66 +0.3 852,244 + RR42_RS03855 0.72 -0.3 852,244 + RR42_RS03855 0.72 -0.6 852,244 + RR42_RS03855 0.72 -0.1 852,271 + RR42_RS03855 0.75 +1.6 852,284 + RR42_RS03855 0.76 +0.5 852,406 + RR42_RS03855 0.89 +0.3 852,406 + RR42_RS03855 0.89 -1.3 852,407 - RR42_RS03855 0.89 -1.8 852,562 - -0.1 852,562 - -0.9 852,562 - +1.8 852,562 - -0.4 852,565 + -0.1 852,566 - +0.4 852,566 - -0.2 852,566 - +3.4 852,566 - -0.1 852,566 - +0.7 852,568 + -0.2 852,568 + -0.6 852,569 - +1.4 852,569 - -0.1 852,569 - -0.4 852,607 + +0.4 852,608 - -0.3 852,608 - +0.7 853,068 + RR42_RS03860 0.21 +0.3 853,069 - RR42_RS03860 0.21 -2.1 853,069 - RR42_RS03860 0.21 -0.6 853,076 + RR42_RS03860 0.22 +0.2 853,203 + RR42_RS03860 0.34 -0.8 853,769 + RR42_RS03860 0.86 -0.9 853,769 + RR42_RS03860 0.86 -0.8 853,770 - RR42_RS03860 0.86 -0.6 853,770 - RR42_RS03860 0.86 -1.1 853,770 - RR42_RS03860 0.86 +1.1 853,774 - RR42_RS03860 0.86 +0.1 853,963 + +0.4 854,031 - -0.2 854,083 - -0.3 854,245 - RR42_RS03865 0.25 -0.9 854,245 - RR42_RS03865 0.25 +0.7 854,651 - RR42_RS03865 0.68 -0.3 854,836 + RR42_RS03865 0.87 +1.7 854,836 + RR42_RS03865 0.87 -0.2 854,837 - RR42_RS03865 0.87 -1.9
Or see this region's nucleotide sequence