Experiment: R2A with Paraquat dichloride 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03620 and RR42_RS03625 are separated by 193 nucleotides RR42_RS03625 and RR42_RS03630 are separated by 335 nucleotides RR42_RS03630 and RR42_RS03635 are separated by 97 nucleotides
RR42_RS03620: RR42_RS03620 - lipid A biosynthesis lauroyl acyltransferase, at 807,239 to 808,117
_RS03620
RR42_RS03625: RR42_RS03625 - hypothetical protein, at 808,311 to 808,550
_RS03625
RR42_RS03630: RR42_RS03630 - cold-shock protein, at 808,886 to 809,089
_RS03630
RR42_RS03635: RR42_RS03635 - trypsin-like serine protease, at 809,187 to 810,089
_RS03635
Position (kb) 808
809
810 Strain fitness (log2 ratio) -2
-1
0
1 at 808.009 kb on - strand, within RR42_RS03620 at 808.051 kb on + strand at 808.052 kb on - strand at 808.052 kb on - strand at 808.052 kb on - strand at 808.052 kb on - strand at 808.053 kb on + strand at 808.053 kb on + strand at 808.278 kb on - strand at 808.387 kb on + strand, within RR42_RS03625 at 808.388 kb on - strand, within RR42_RS03625 at 808.482 kb on + strand, within RR42_RS03625 at 808.482 kb on + strand, within RR42_RS03625 at 808.483 kb on - strand, within RR42_RS03625 at 808.483 kb on - strand, within RR42_RS03625 at 808.483 kb on - strand, within RR42_RS03625 at 808.582 kb on + strand at 808.583 kb on - strand at 808.599 kb on + strand at 808.599 kb on + strand at 808.601 kb on + strand at 808.620 kb on + strand at 808.620 kb on + strand at 808.620 kb on + strand at 808.620 kb on + strand at 808.621 kb on - strand at 808.621 kb on - strand at 808.621 kb on - strand at 808.621 kb on - strand at 808.716 kb on + strand at 808.730 kb on - strand at 808.865 kb on - strand at 808.871 kb on + strand at 808.872 kb on - strand at 808.872 kb on - strand at 809.033 kb on + strand, within RR42_RS03630 at 809.087 kb on + strand at 809.111 kb on - strand at 809.179 kb on - strand at 809.192 kb on + strand at 809.193 kb on - strand at 809.677 kb on - strand, within RR42_RS03635 at 809.890 kb on - strand, within RR42_RS03635 at 809.890 kb on - strand, within RR42_RS03635 at 810.087 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Paraquat dichloride 0.064 mg/ml remove 808,009 - RR42_RS03620 0.88 -1.8 808,051 + +0.3 808,052 - -1.7 808,052 - -0.2 808,052 - +0.6 808,052 - +1.4 808,053 + -0.6 808,053 + -1.2 808,278 - -0.2 808,387 + RR42_RS03625 0.32 -0.4 808,388 - RR42_RS03625 0.32 +1.3 808,482 + RR42_RS03625 0.71 -1.0 808,482 + RR42_RS03625 0.71 -1.1 808,483 - RR42_RS03625 0.72 +0.9 808,483 - RR42_RS03625 0.72 +0.8 808,483 - RR42_RS03625 0.72 +1.4 808,582 + +0.4 808,583 - +0.0 808,599 + -0.7 808,599 + -0.6 808,601 + -0.5 808,620 + -0.1 808,620 + -1.3 808,620 + -0.4 808,620 + +0.2 808,621 - -0.3 808,621 - -0.2 808,621 - +0.0 808,621 - -0.7 808,716 + +0.2 808,730 - -1.0 808,865 - -0.9 808,871 + -0.3 808,872 - -1.5 808,872 - -0.7 809,033 + RR42_RS03630 0.72 +1.0 809,087 + +0.7 809,111 - +0.1 809,179 - +0.1 809,192 + +0.3 809,193 - -0.1 809,677 - RR42_RS03635 0.54 +0.8 809,890 - RR42_RS03635 0.78 +0.2 809,890 - RR42_RS03635 0.78 -0.2 810,087 + +0.0
Or see this region's nucleotide sequence