Experiment: R2A with Paraquat dichloride 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03415 and RR42_RS03420 are separated by 70 nucleotides RR42_RS03420 and RR42_RS03425 are separated by 95 nucleotides
RR42_RS03415: RR42_RS03415 - N-acetylmuramoyl-L-alanine amidase, at 759,332 to 760,837
_RS03415
RR42_RS03420: RR42_RS03420 - bile acid:sodium symporter, at 760,908 to 761,930
_RS03420
RR42_RS03425: RR42_RS03425 - LysR family transcriptional regulator, at 762,026 to 762,934
_RS03425
Position (kb) 760
761
762 Strain fitness (log2 ratio) -2
-1
0
1
2 at 760.268 kb on - strand, within RR42_RS03415 at 760.268 kb on - strand, within RR42_RS03415 at 760.318 kb on - strand, within RR42_RS03415 at 760.793 kb on + strand at 760.793 kb on + strand at 760.794 kb on - strand at 760.794 kb on - strand at 760.836 kb on - strand at 760.999 kb on + strand at 761.000 kb on - strand at 761.227 kb on + strand, within RR42_RS03420 at 761.227 kb on + strand, within RR42_RS03420 at 761.228 kb on - strand, within RR42_RS03420 at 761.228 kb on - strand, within RR42_RS03420 at 761.228 kb on - strand, within RR42_RS03420 at 761.272 kb on + strand, within RR42_RS03420 at 761.273 kb on - strand, within RR42_RS03420 at 761.273 kb on - strand, within RR42_RS03420 at 761.426 kb on + strand, within RR42_RS03420 at 761.426 kb on + strand, within RR42_RS03420 at 761.427 kb on - strand, within RR42_RS03420 at 761.590 kb on + strand, within RR42_RS03420 at 761.590 kb on + strand, within RR42_RS03420 at 761.590 kb on + strand, within RR42_RS03420 at 761.591 kb on - strand, within RR42_RS03420 at 761.591 kb on - strand, within RR42_RS03420 at 761.591 kb on - strand, within RR42_RS03420 at 761.591 kb on - strand, within RR42_RS03420 at 761.591 kb on - strand, within RR42_RS03420 at 761.674 kb on + strand, within RR42_RS03420 at 761.674 kb on + strand, within RR42_RS03420 at 761.674 kb on + strand, within RR42_RS03420 at 761.674 kb on + strand, within RR42_RS03420 at 761.674 kb on + strand, within RR42_RS03420 at 761.675 kb on - strand, within RR42_RS03420 at 761.675 kb on - strand, within RR42_RS03420 at 761.675 kb on - strand, within RR42_RS03420 at 761.675 kb on - strand, within RR42_RS03420 at 761.874 kb on + strand at 761.874 kb on + strand at 761.874 kb on + strand at 761.874 kb on + strand at 761.875 kb on - strand at 761.946 kb on + strand at 761.963 kb on - strand at 762.033 kb on - strand at 762.296 kb on + strand, within RR42_RS03425 at 762.356 kb on + strand, within RR42_RS03425 at 762.356 kb on + strand, within RR42_RS03425 at 762.356 kb on + strand, within RR42_RS03425 at 762.356 kb on + strand, within RR42_RS03425 at 762.356 kb on + strand, within RR42_RS03425 at 762.356 kb on + strand, within RR42_RS03425 at 762.357 kb on - strand, within RR42_RS03425 at 762.357 kb on - strand, within RR42_RS03425 at 762.357 kb on - strand, within RR42_RS03425 at 762.357 kb on - strand, within RR42_RS03425 at 762.357 kb on - strand, within RR42_RS03425 at 762.357 kb on - strand, within RR42_RS03425 at 762.357 kb on - strand, within RR42_RS03425 at 762.357 kb on - strand, within RR42_RS03425 at 762.357 kb on - strand, within RR42_RS03425 at 762.465 kb on + strand, within RR42_RS03425 at 762.465 kb on + strand, within RR42_RS03425 at 762.466 kb on - strand, within RR42_RS03425 at 762.597 kb on + strand, within RR42_RS03425 at 762.597 kb on + strand, within RR42_RS03425 at 762.598 kb on - strand, within RR42_RS03425 at 762.891 kb on + strand at 762.891 kb on + strand at 762.891 kb on + strand at 762.892 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Paraquat dichloride 0.064 mg/ml remove 760,268 - RR42_RS03415 0.62 -2.1 760,268 - RR42_RS03415 0.62 -0.4 760,318 - RR42_RS03415 0.65 -1.1 760,793 + -0.1 760,793 + -0.1 760,794 - +0.9 760,794 - +0.2 760,836 - -0.6 760,999 + -0.6 761,000 - -0.6 761,227 + RR42_RS03420 0.31 -1.0 761,227 + RR42_RS03420 0.31 -1.9 761,228 - RR42_RS03420 0.31 -2.1 761,228 - RR42_RS03420 0.31 -0.6 761,228 - RR42_RS03420 0.31 +1.4 761,272 + RR42_RS03420 0.36 -0.5 761,273 - RR42_RS03420 0.36 -0.5 761,273 - RR42_RS03420 0.36 -0.0 761,426 + RR42_RS03420 0.51 -1.6 761,426 + RR42_RS03420 0.51 -2.4 761,427 - RR42_RS03420 0.51 -1.0 761,590 + RR42_RS03420 0.67 -2.6 761,590 + RR42_RS03420 0.67 -1.1 761,590 + RR42_RS03420 0.67 -0.4 761,591 - RR42_RS03420 0.67 -0.7 761,591 - RR42_RS03420 0.67 -0.6 761,591 - RR42_RS03420 0.67 -0.6 761,591 - RR42_RS03420 0.67 -1.0 761,591 - RR42_RS03420 0.67 +1.7 761,674 + RR42_RS03420 0.75 -0.6 761,674 + RR42_RS03420 0.75 +0.5 761,674 + RR42_RS03420 0.75 -1.4 761,674 + RR42_RS03420 0.75 +0.9 761,674 + RR42_RS03420 0.75 -2.7 761,675 - RR42_RS03420 0.75 -0.8 761,675 - RR42_RS03420 0.75 +0.1 761,675 - RR42_RS03420 0.75 +1.9 761,675 - RR42_RS03420 0.75 -1.6 761,874 + -0.7 761,874 + +0.5 761,874 + -0.5 761,874 + +0.2 761,875 - -0.3 761,946 + -0.1 761,963 - -0.1 762,033 - +0.1 762,296 + RR42_RS03425 0.30 +1.4 762,356 + RR42_RS03425 0.36 -0.3 762,356 + RR42_RS03425 0.36 +1.4 762,356 + RR42_RS03425 0.36 -1.5 762,356 + RR42_RS03425 0.36 -0.6 762,356 + RR42_RS03425 0.36 +2.1 762,356 + RR42_RS03425 0.36 +0.9 762,357 - RR42_RS03425 0.36 -1.9 762,357 - RR42_RS03425 0.36 +0.3 762,357 - RR42_RS03425 0.36 +0.9 762,357 - RR42_RS03425 0.36 -0.3 762,357 - RR42_RS03425 0.36 -0.4 762,357 - RR42_RS03425 0.36 -0.6 762,357 - RR42_RS03425 0.36 -0.0 762,357 - RR42_RS03425 0.36 -0.0 762,357 - RR42_RS03425 0.36 -0.4 762,465 + RR42_RS03425 0.48 -0.8 762,465 + RR42_RS03425 0.48 +0.5 762,466 - RR42_RS03425 0.48 +0.6 762,597 + RR42_RS03425 0.63 -0.7 762,597 + RR42_RS03425 0.63 +1.4 762,598 - RR42_RS03425 0.63 -0.6 762,891 + +1.1 762,891 + +0.9 762,891 + -0.6 762,892 - -0.4
Or see this region's nucleotide sequence