Experiment: R2A with Paraquat dichloride 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03295 and RR42_RS03300 are separated by 44 nucleotides RR42_RS03300 and RR42_RS03305 are separated by 9 nucleotides
RR42_RS03295: RR42_RS03295 - histidine kinase, at 728,520 to 729,947
_RS03295
RR42_RS03300: RR42_RS03300 - RND transporter, at 729,992 to 731,482
_RS03300
RR42_RS03305: RR42_RS03305 - acriflavin resistance protein, at 731,492 to 734,788
_RS03305
Position (kb) 729
730
731
732 Strain fitness (log2 ratio) -2
-1
0
1
2 at 729.237 kb on + strand, within RR42_RS03295 at 729.238 kb on - strand, within RR42_RS03295 at 729.649 kb on - strand, within RR42_RS03295 at 729.651 kb on - strand, within RR42_RS03295 at 729.651 kb on - strand, within RR42_RS03295 at 729.704 kb on - strand, within RR42_RS03295 at 729.707 kb on - strand, within RR42_RS03295 at 729.994 kb on - strand at 729.994 kb on - strand at 730.108 kb on - strand at 730.118 kb on + strand at 730.119 kb on - strand at 730.131 kb on + strand at 730.132 kb on - strand at 730.132 kb on - strand at 730.132 kb on - strand at 730.172 kb on + strand, within RR42_RS03300 at 730.172 kb on + strand, within RR42_RS03300 at 730.173 kb on - strand, within RR42_RS03300 at 730.527 kb on + strand, within RR42_RS03300 at 730.857 kb on + strand, within RR42_RS03300 at 730.918 kb on - strand, within RR42_RS03300 at 730.918 kb on - strand, within RR42_RS03300 at 731.426 kb on + strand at 731.470 kb on + strand at 731.584 kb on - strand at 731.976 kb on + strand, within RR42_RS03305 at 731.976 kb on + strand, within RR42_RS03305 at 731.976 kb on + strand, within RR42_RS03305 at 731.976 kb on + strand, within RR42_RS03305 at 731.977 kb on - strand, within RR42_RS03305 at 731.977 kb on - strand, within RR42_RS03305 at 731.977 kb on - strand, within RR42_RS03305 at 731.986 kb on - strand, within RR42_RS03305 at 731.986 kb on - strand, within RR42_RS03305 at 732.005 kb on - strand, within RR42_RS03305 at 732.006 kb on + strand, within RR42_RS03305 at 732.006 kb on + strand, within RR42_RS03305 at 732.006 kb on + strand, within RR42_RS03305 at 732.007 kb on - strand, within RR42_RS03305 at 732.007 kb on - strand, within RR42_RS03305 at 732.007 kb on - strand, within RR42_RS03305 at 732.297 kb on + strand, within RR42_RS03305 at 732.297 kb on + strand, within RR42_RS03305 at 732.297 kb on + strand, within RR42_RS03305 at 732.297 kb on + strand, within RR42_RS03305 at 732.297 kb on + strand, within RR42_RS03305 at 732.297 kb on + strand, within RR42_RS03305 at 732.298 kb on - strand, within RR42_RS03305 at 732.298 kb on - strand, within RR42_RS03305 at 732.298 kb on - strand, within RR42_RS03305 at 732.298 kb on - strand, within RR42_RS03305 at 732.298 kb on - strand, within RR42_RS03305 at 732.302 kb on - strand, within RR42_RS03305 at 732.360 kb on + strand, within RR42_RS03305 at 732.378 kb on + strand, within RR42_RS03305 at 732.379 kb on - strand, within RR42_RS03305 at 732.379 kb on - strand, within RR42_RS03305
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Paraquat dichloride 0.064 mg/ml remove 729,237 + RR42_RS03295 0.50 +0.9 729,238 - RR42_RS03295 0.50 -1.3 729,649 - RR42_RS03295 0.79 -0.7 729,651 - RR42_RS03295 0.79 -1.5 729,651 - RR42_RS03295 0.79 +0.1 729,704 - RR42_RS03295 0.83 -1.5 729,707 - RR42_RS03295 0.83 +0.1 729,994 - -1.6 729,994 - +0.1 730,108 - +0.1 730,118 + -0.4 730,119 - -1.7 730,131 + +0.0 730,132 - +1.9 730,132 - +0.9 730,132 - +0.5 730,172 + RR42_RS03300 0.12 -0.8 730,172 + RR42_RS03300 0.12 +0.5 730,173 - RR42_RS03300 0.12 -0.4 730,527 + RR42_RS03300 0.36 +0.0 730,857 + RR42_RS03300 0.58 -0.7 730,918 - RR42_RS03300 0.62 -0.8 730,918 - RR42_RS03300 0.62 -0.6 731,426 + -0.3 731,470 + -0.5 731,584 - -2.3 731,976 + RR42_RS03305 0.15 -1.3 731,976 + RR42_RS03305 0.15 +0.9 731,976 + RR42_RS03305 0.15 +0.7 731,976 + RR42_RS03305 0.15 -0.9 731,977 - RR42_RS03305 0.15 +2.5 731,977 - RR42_RS03305 0.15 -1.3 731,977 - RR42_RS03305 0.15 -0.0 731,986 - RR42_RS03305 0.15 +0.6 731,986 - RR42_RS03305 0.15 +0.7 732,005 - RR42_RS03305 0.16 -0.7 732,006 + RR42_RS03305 0.16 +0.2 732,006 + RR42_RS03305 0.16 -0.5 732,006 + RR42_RS03305 0.16 -0.5 732,007 - RR42_RS03305 0.16 -0.3 732,007 - RR42_RS03305 0.16 -0.4 732,007 - RR42_RS03305 0.16 -0.5 732,297 + RR42_RS03305 0.24 -0.3 732,297 + RR42_RS03305 0.24 -0.7 732,297 + RR42_RS03305 0.24 -1.5 732,297 + RR42_RS03305 0.24 +0.5 732,297 + RR42_RS03305 0.24 +0.8 732,297 + RR42_RS03305 0.24 -0.1 732,298 - RR42_RS03305 0.24 -1.3 732,298 - RR42_RS03305 0.24 +0.5 732,298 - RR42_RS03305 0.24 -1.2 732,298 - RR42_RS03305 0.24 -0.5 732,298 - RR42_RS03305 0.24 +0.1 732,302 - RR42_RS03305 0.25 +0.9 732,360 + RR42_RS03305 0.26 +0.2 732,378 + RR42_RS03305 0.27 +0.7 732,379 - RR42_RS03305 0.27 -0.5 732,379 - RR42_RS03305 0.27 -1.2
Or see this region's nucleotide sequence