Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS03185

Experiment: R2A with Paraquat dichloride 0.064 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS03180 and RR42_RS03185 are separated by 153 nucleotidesRR42_RS03185 and RR42_RS03190 overlap by 4 nucleotidesRR42_RS03190 and RR42_RS03195 are separated by 40 nucleotides RR42_RS03180: RR42_RS03180 - ABC transporter substrate-binding protein, at 704,625 to 705,665 _RS03180 RR42_RS03185: RR42_RS03185 - branched-chain amino acid permease, at 705,819 to 706,649 _RS03185 RR42_RS03190: RR42_RS03190 - branched-chain amino acid transporter, at 706,646 to 706,969 _RS03190 RR42_RS03195: RR42_RS03195 - LuxR family transcriptional regulator, at 707,010 to 708,137 _RS03195 Position (kb) 705 706 707Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 704.880 kb on + strand, within RR42_RS03180at 704.880 kb on + strand, within RR42_RS03180at 704.880 kb on + strand, within RR42_RS03180at 704.880 kb on + strand, within RR42_RS03180at 704.881 kb on - strand, within RR42_RS03180at 704.881 kb on - strand, within RR42_RS03180at 704.881 kb on - strand, within RR42_RS03180at 704.881 kb on - strand, within RR42_RS03180at 705.000 kb on + strand, within RR42_RS03180at 705.000 kb on + strand, within RR42_RS03180at 705.150 kb on + strand, within RR42_RS03180at 705.151 kb on - strand, within RR42_RS03180at 705.151 kb on - strand, within RR42_RS03180at 705.156 kb on + strand, within RR42_RS03180at 705.156 kb on + strand, within RR42_RS03180at 705.157 kb on - strand, within RR42_RS03180at 705.157 kb on - strand, within RR42_RS03180at 705.157 kb on - strand, within RR42_RS03180at 705.157 kb on - strand, within RR42_RS03180at 705.227 kb on + strand, within RR42_RS03180at 705.227 kb on + strand, within RR42_RS03180at 705.227 kb on + strand, within RR42_RS03180at 705.227 kb on + strand, within RR42_RS03180at 705.243 kb on + strand, within RR42_RS03180at 705.243 kb on + strand, within RR42_RS03180at 705.243 kb on + strand, within RR42_RS03180at 705.330 kb on + strand, within RR42_RS03180at 705.331 kb on - strand, within RR42_RS03180at 705.656 kb on + strandat 705.656 kb on + strandat 705.656 kb on + strandat 705.657 kb on - strandat 705.657 kb on - strandat 705.666 kb on + strandat 705.666 kb on + strandat 705.666 kb on + strandat 705.667 kb on - strandat 705.688 kb on + strandat 705.688 kb on + strandat 705.688 kb on + strandat 705.688 kb on + strandat 705.689 kb on - strandat 705.689 kb on - strandat 705.695 kb on - strandat 705.695 kb on - strandat 705.718 kb on + strandat 705.730 kb on + strandat 705.730 kb on + strandat 705.730 kb on + strandat 705.730 kb on + strandat 705.731 kb on - strandat 705.752 kb on + strandat 705.753 kb on - strandat 705.753 kb on - strandat 705.753 kb on - strandat 705.753 kb on - strandat 705.753 kb on - strandat 705.754 kb on + strandat 705.754 kb on + strandat 705.754 kb on + strandat 705.755 kb on - strandat 705.755 kb on - strandat 705.755 kb on - strandat 705.818 kb on + strandat 705.890 kb on + strandat 705.891 kb on - strandat 705.891 kb on - strandat 705.907 kb on - strand, within RR42_RS03185at 706.018 kb on - strand, within RR42_RS03185at 706.227 kb on + strand, within RR42_RS03185at 706.263 kb on + strand, within RR42_RS03185at 706.772 kb on + strand, within RR42_RS03190at 706.856 kb on + strand, within RR42_RS03190at 706.856 kb on + strand, within RR42_RS03190at 706.856 kb on + strand, within RR42_RS03190at 706.856 kb on + strand, within RR42_RS03190at 706.856 kb on + strand, within RR42_RS03190at 706.856 kb on + strand, within RR42_RS03190at 706.857 kb on - strand, within RR42_RS03190at 706.857 kb on - strand, within RR42_RS03190at 706.857 kb on - strand, within RR42_RS03190at 706.857 kb on - strand, within RR42_RS03190at 706.857 kb on - strand, within RR42_RS03190at 706.893 kb on - strand, within RR42_RS03190at 706.943 kb on + strandat 706.943 kb on + strandat 706.943 kb on + strandat 706.943 kb on + strandat 707.236 kb on + strand, within RR42_RS03195at 707.237 kb on - strand, within RR42_RS03195at 707.237 kb on - strand, within RR42_RS03195

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Paraquat dichloride 0.064 mg/ml
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704,880 + RR42_RS03180 0.24 +0.1
704,880 + RR42_RS03180 0.24 -0.7
704,880 + RR42_RS03180 0.24 +1.0
704,880 + RR42_RS03180 0.24 -0.2
704,881 - RR42_RS03180 0.25 +2.5
704,881 - RR42_RS03180 0.25 -0.3
704,881 - RR42_RS03180 0.25 +0.6
704,881 - RR42_RS03180 0.25 -0.3
705,000 + RR42_RS03180 0.36 -0.1
705,000 + RR42_RS03180 0.36 +0.0
705,150 + RR42_RS03180 0.50 +0.1
705,151 - RR42_RS03180 0.51 +0.2
705,151 - RR42_RS03180 0.51 +0.1
705,156 + RR42_RS03180 0.51 -0.8
705,156 + RR42_RS03180 0.51 -0.0
705,157 - RR42_RS03180 0.51 +0.7
705,157 - RR42_RS03180 0.51 -0.7
705,157 - RR42_RS03180 0.51 +0.5
705,157 - RR42_RS03180 0.51 -0.9
705,227 + RR42_RS03180 0.58 +0.4
705,227 + RR42_RS03180 0.58 +1.4
705,227 + RR42_RS03180 0.58 -0.1
705,227 + RR42_RS03180 0.58 -0.1
705,243 + RR42_RS03180 0.59 +1.5
705,243 + RR42_RS03180 0.59 +0.4
705,243 + RR42_RS03180 0.59 +0.1
705,330 + RR42_RS03180 0.68 +0.0
705,331 - RR42_RS03180 0.68 -0.9
705,656 + -0.8
705,656 + -1.6
705,656 + -0.5
705,657 - +0.1
705,657 - -0.0
705,666 + -1.1
705,666 + -1.1
705,666 + -0.9
705,667 - -0.9
705,688 + -1.2
705,688 + -0.5
705,688 + -0.2
705,688 + -0.9
705,689 - -1.1
705,689 - -1.0
705,695 - -2.6
705,695 - +0.4
705,718 + -2.3
705,730 + +0.3
705,730 + +0.1
705,730 + -0.3
705,730 + -0.3
705,731 - +0.1
705,752 + -2.2
705,753 - +0.7
705,753 - +0.3
705,753 - -0.4
705,753 - +0.3
705,753 - -0.5
705,754 + -1.1
705,754 + +0.2
705,754 + +0.9
705,755 - +2.5
705,755 - -0.1
705,755 - -0.1
705,818 + -2.8
705,890 + -2.1
705,891 - +1.1
705,891 - +2.5
705,907 - RR42_RS03185 0.11 -2.2
706,018 - RR42_RS03185 0.24 -0.2
706,227 + RR42_RS03185 0.49 -1.8
706,263 + RR42_RS03185 0.53 +0.1
706,772 + RR42_RS03190 0.39 -0.5
706,856 + RR42_RS03190 0.65 +0.4
706,856 + RR42_RS03190 0.65 +1.0
706,856 + RR42_RS03190 0.65 +0.4
706,856 + RR42_RS03190 0.65 +0.4
706,856 + RR42_RS03190 0.65 -0.1
706,856 + RR42_RS03190 0.65 -0.5
706,857 - RR42_RS03190 0.65 +0.2
706,857 - RR42_RS03190 0.65 +0.1
706,857 - RR42_RS03190 0.65 -0.4
706,857 - RR42_RS03190 0.65 -0.6
706,857 - RR42_RS03190 0.65 -0.2
706,893 - RR42_RS03190 0.76 +0.1
706,943 + +0.5
706,943 + +0.9
706,943 + -0.2
706,943 + -0.5
707,236 + RR42_RS03195 0.20 +0.9
707,237 - RR42_RS03195 0.20 -0.4
707,237 - RR42_RS03195 0.20 +0.2

Or see this region's nucleotide sequence