Experiment: R2A with Paraquat dichloride 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02445 and RR42_RS02450 are separated by 65 nucleotides RR42_RS02450 and RR42_RS02455 are separated by 33 nucleotides
RR42_RS02445: RR42_RS02445 - aspartyl-tRNA synthetase, at 549,551 to 551,356
_RS02445
RR42_RS02450: RR42_RS02450 - MFS transporter, at 551,422 to 552,729
_RS02450
RR42_RS02455: RR42_RS02455 - agmatinase, at 552,763 to 553,749
_RS02455
Position (kb) 551
552
553 Strain fitness (log2 ratio) -1
0
1
2 at 551.503 kb on + strand at 551.522 kb on + strand at 551.522 kb on + strand at 551.522 kb on + strand at 551.522 kb on + strand at 551.522 kb on + strand at 551.523 kb on - strand at 551.642 kb on + strand, within RR42_RS02450 at 551.642 kb on + strand, within RR42_RS02450 at 551.694 kb on - strand, within RR42_RS02450 at 551.711 kb on - strand, within RR42_RS02450 at 551.737 kb on + strand, within RR42_RS02450 at 551.737 kb on + strand, within RR42_RS02450 at 551.933 kb on + strand, within RR42_RS02450 at 551.945 kb on + strand, within RR42_RS02450 at 551.945 kb on + strand, within RR42_RS02450 at 551.946 kb on - strand, within RR42_RS02450 at 551.973 kb on - strand, within RR42_RS02450 at 551.973 kb on - strand, within RR42_RS02450 at 551.973 kb on - strand, within RR42_RS02450 at 551.990 kb on + strand, within RR42_RS02450 at 551.990 kb on + strand, within RR42_RS02450 at 551.991 kb on - strand, within RR42_RS02450 at 552.034 kb on + strand, within RR42_RS02450 at 552.034 kb on + strand, within RR42_RS02450 at 552.035 kb on - strand, within RR42_RS02450 at 552.035 kb on - strand, within RR42_RS02450 at 552.035 kb on - strand, within RR42_RS02450 at 552.282 kb on + strand, within RR42_RS02450 at 552.283 kb on - strand, within RR42_RS02450 at 552.410 kb on + strand, within RR42_RS02450 at 552.410 kb on + strand, within RR42_RS02450 at 552.410 kb on + strand, within RR42_RS02450 at 552.410 kb on + strand, within RR42_RS02450 at 552.411 kb on - strand, within RR42_RS02450 at 552.411 kb on - strand, within RR42_RS02450 at 552.411 kb on - strand, within RR42_RS02450 at 552.415 kb on - strand, within RR42_RS02450 at 552.415 kb on - strand, within RR42_RS02450 at 552.415 kb on - strand, within RR42_RS02450 at 552.415 kb on - strand, within RR42_RS02450 at 552.415 kb on - strand, within RR42_RS02450 at 552.415 kb on - strand, within RR42_RS02450 at 552.415 kb on - strand, within RR42_RS02450 at 552.415 kb on - strand, within RR42_RS02450 at 552.415 kb on - strand, within RR42_RS02450 at 552.638 kb on + strand at 552.639 kb on - strand at 552.639 kb on - strand at 552.644 kb on + strand at 552.653 kb on + strand at 552.721 kb on - strand at 552.803 kb on - strand at 552.803 kb on - strand at 552.854 kb on + strand at 552.913 kb on + strand, within RR42_RS02455 at 552.913 kb on + strand, within RR42_RS02455 at 552.913 kb on + strand, within RR42_RS02455 at 552.913 kb on + strand, within RR42_RS02455 at 552.913 kb on + strand, within RR42_RS02455 at 552.913 kb on + strand, within RR42_RS02455 at 552.914 kb on - strand, within RR42_RS02455 at 552.914 kb on - strand, within RR42_RS02455 at 552.914 kb on - strand, within RR42_RS02455 at 552.977 kb on + strand, within RR42_RS02455 at 552.977 kb on + strand, within RR42_RS02455 at 553.013 kb on + strand, within RR42_RS02455 at 553.014 kb on - strand, within RR42_RS02455 at 553.508 kb on + strand, within RR42_RS02455 at 553.508 kb on + strand, within RR42_RS02455 at 553.509 kb on - strand, within RR42_RS02455
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Paraquat dichloride 0.064 mg/ml remove 551,503 + -1.0 551,522 + +0.0 551,522 + +0.9 551,522 + -1.2 551,522 + -1.5 551,522 + +0.4 551,523 - -0.8 551,642 + RR42_RS02450 0.17 -0.2 551,642 + RR42_RS02450 0.17 +1.0 551,694 - RR42_RS02450 0.21 +0.9 551,711 - RR42_RS02450 0.22 -0.2 551,737 + RR42_RS02450 0.24 +0.7 551,737 + RR42_RS02450 0.24 -0.2 551,933 + RR42_RS02450 0.39 -1.1 551,945 + RR42_RS02450 0.40 +1.3 551,945 + RR42_RS02450 0.40 +0.5 551,946 - RR42_RS02450 0.40 +0.2 551,973 - RR42_RS02450 0.42 +1.2 551,973 - RR42_RS02450 0.42 +1.5 551,973 - RR42_RS02450 0.42 +0.6 551,990 + RR42_RS02450 0.43 -0.6 551,990 + RR42_RS02450 0.43 +0.7 551,991 - RR42_RS02450 0.44 +0.1 552,034 + RR42_RS02450 0.47 -1.3 552,034 + RR42_RS02450 0.47 -0.2 552,035 - RR42_RS02450 0.47 +1.5 552,035 - RR42_RS02450 0.47 -0.5 552,035 - RR42_RS02450 0.47 +1.1 552,282 + RR42_RS02450 0.66 -1.4 552,283 - RR42_RS02450 0.66 -0.2 552,410 + RR42_RS02450 0.76 -0.0 552,410 + RR42_RS02450 0.76 +0.6 552,410 + RR42_RS02450 0.76 +0.1 552,410 + RR42_RS02450 0.76 -0.5 552,411 - RR42_RS02450 0.76 -0.2 552,411 - RR42_RS02450 0.76 +0.7 552,411 - RR42_RS02450 0.76 +0.9 552,415 - RR42_RS02450 0.76 -0.0 552,415 - RR42_RS02450 0.76 -0.2 552,415 - RR42_RS02450 0.76 +0.6 552,415 - RR42_RS02450 0.76 +0.1 552,415 - RR42_RS02450 0.76 -0.1 552,415 - RR42_RS02450 0.76 -0.7 552,415 - RR42_RS02450 0.76 +0.2 552,415 - RR42_RS02450 0.76 -0.1 552,415 - RR42_RS02450 0.76 +0.7 552,638 + +2.5 552,639 - +0.0 552,639 - +1.4 552,644 + -0.2 552,653 + -0.8 552,721 - -0.7 552,803 - +2.5 552,803 - +1.1 552,854 + +0.5 552,913 + RR42_RS02455 0.15 -0.3 552,913 + RR42_RS02455 0.15 -0.9 552,913 + RR42_RS02455 0.15 -0.4 552,913 + RR42_RS02455 0.15 +0.4 552,913 + RR42_RS02455 0.15 -0.1 552,913 + RR42_RS02455 0.15 +0.7 552,914 - RR42_RS02455 0.15 +0.3 552,914 - RR42_RS02455 0.15 +0.8 552,914 - RR42_RS02455 0.15 +1.0 552,977 + RR42_RS02455 0.22 +0.6 552,977 + RR42_RS02455 0.22 +0.2 553,013 + RR42_RS02455 0.25 +0.7 553,014 - RR42_RS02455 0.25 +1.0 553,508 + RR42_RS02455 0.75 +1.0 553,508 + RR42_RS02455 0.75 -0.0 553,509 - RR42_RS02455 0.76 +0.0
Or see this region's nucleotide sequence