Experiment: R2A with Paraquat dichloride 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02265 and RR42_RS02270 are separated by 297 nucleotides RR42_RS02270 and RR42_RS02275 are separated by 119 nucleotides RR42_RS02275 and RR42_RS02280 are separated by 71 nucleotides
RR42_RS02265: RR42_RS02265 - excinuclease ABC subunit A, at 502,573 to 508,392
_RS02265
RR42_RS02270: RR42_RS02270 - hypothetical protein, at 508,690 to 508,974
_RS02270
RR42_RS02275: RR42_RS02275 - aspartate aminotransferase, at 509,094 to 510,287
_RS02275
RR42_RS02280: RR42_RS02280 - ABC transporter permease, at 510,359 to 511,807
_RS02280
Position (kb) 509
510
511 Strain fitness (log2 ratio) -1
0
1
2 at 508.126 kb on + strand at 508.126 kb on + strand at 508.127 kb on - strand at 508.127 kb on - strand at 508.871 kb on - strand, within RR42_RS02270 at 509.033 kb on + strand at 509.075 kb on + strand at 509.076 kb on - strand at 509.305 kb on - strand, within RR42_RS02275 at 509.305 kb on - strand, within RR42_RS02275 at 509.606 kb on + strand, within RR42_RS02275 at 509.606 kb on + strand, within RR42_RS02275 at 509.607 kb on - strand, within RR42_RS02275 at 509.730 kb on + strand, within RR42_RS02275 at 509.731 kb on - strand, within RR42_RS02275 at 509.731 kb on - strand, within RR42_RS02275 at 509.742 kb on + strand, within RR42_RS02275 at 509.743 kb on - strand, within RR42_RS02275 at 509.743 kb on - strand, within RR42_RS02275 at 509.917 kb on - strand, within RR42_RS02275 at 509.917 kb on - strand, within RR42_RS02275 at 510.090 kb on + strand, within RR42_RS02275 at 510.090 kb on + strand, within RR42_RS02275 at 510.090 kb on + strand, within RR42_RS02275 at 510.090 kb on + strand, within RR42_RS02275 at 510.090 kb on + strand, within RR42_RS02275 at 510.090 kb on + strand, within RR42_RS02275 at 510.091 kb on - strand, within RR42_RS02275 at 510.091 kb on - strand, within RR42_RS02275 at 510.091 kb on - strand, within RR42_RS02275 at 510.091 kb on - strand, within RR42_RS02275 at 510.091 kb on - strand, within RR42_RS02275 at 510.091 kb on - strand, within RR42_RS02275 at 510.223 kb on - strand at 510.223 kb on - strand at 510.360 kb on + strand at 510.535 kb on - strand, within RR42_RS02280 at 510.672 kb on + strand, within RR42_RS02280 at 511.035 kb on + strand, within RR42_RS02280 at 511.035 kb on + strand, within RR42_RS02280 at 511.035 kb on + strand, within RR42_RS02280 at 511.036 kb on - strand, within RR42_RS02280
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Paraquat dichloride 0.064 mg/ml remove 508,126 + -1.5 508,126 + -0.0 508,127 - -1.1 508,127 - +1.1 508,871 - RR42_RS02270 0.64 -0.5 509,033 + +0.1 509,075 + -0.3 509,076 - +0.5 509,305 - RR42_RS02275 0.18 -0.7 509,305 - RR42_RS02275 0.18 -0.1 509,606 + RR42_RS02275 0.43 -0.5 509,606 + RR42_RS02275 0.43 +0.7 509,607 - RR42_RS02275 0.43 +2.1 509,730 + RR42_RS02275 0.53 +0.6 509,731 - RR42_RS02275 0.53 -0.2 509,731 - RR42_RS02275 0.53 -0.8 509,742 + RR42_RS02275 0.54 +1.4 509,743 - RR42_RS02275 0.54 -0.1 509,743 - RR42_RS02275 0.54 -0.1 509,917 - RR42_RS02275 0.69 +0.4 509,917 - RR42_RS02275 0.69 -0.1 510,090 + RR42_RS02275 0.83 +0.8 510,090 + RR42_RS02275 0.83 +0.6 510,090 + RR42_RS02275 0.83 +1.2 510,090 + RR42_RS02275 0.83 +0.9 510,090 + RR42_RS02275 0.83 +1.5 510,090 + RR42_RS02275 0.83 +1.6 510,091 - RR42_RS02275 0.84 -1.5 510,091 - RR42_RS02275 0.84 +0.8 510,091 - RR42_RS02275 0.84 +0.9 510,091 - RR42_RS02275 0.84 -1.2 510,091 - RR42_RS02275 0.84 +0.8 510,091 - RR42_RS02275 0.84 +1.4 510,223 - -0.3 510,223 - +0.4 510,360 + -0.1 510,535 - RR42_RS02280 0.12 +0.2 510,672 + RR42_RS02280 0.22 +0.2 511,035 + RR42_RS02280 0.47 -0.1 511,035 + RR42_RS02280 0.47 +0.9 511,035 + RR42_RS02280 0.47 +0.5 511,036 - RR42_RS02280 0.47 +0.2
Or see this region's nucleotide sequence