Experiment: R2A with Paraquat dichloride 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02160 and RR42_RS02165 are separated by 102 nucleotides RR42_RS02165 and RR42_RS02170 are separated by 215 nucleotides RR42_RS02170 and RR42_RS02175 are separated by 20 nucleotides
RR42_RS02160: RR42_RS02160 - LacI family transcriptional regulator, at 480,232 to 481,215
_RS02160
RR42_RS02165: RR42_RS02165 - LysR family transcriptional regulator, at 481,318 to 482,256
_RS02165
RR42_RS02170: RR42_RS02170 - hypothetical protein, at 482,472 to 483,209
_RS02170
RR42_RS02175: RR42_RS02175 - acetolactate synthase, at 483,230 to 484,855
_RS02175
Position (kb) 481
482
483 Strain fitness (log2 ratio) -2
-1
0
1
2 at 480.321 kb on + strand at 480.450 kb on - strand, within RR42_RS02160 at 480.450 kb on - strand, within RR42_RS02160 at 480.460 kb on + strand, within RR42_RS02160 at 480.460 kb on + strand, within RR42_RS02160 at 480.461 kb on - strand, within RR42_RS02160 at 480.461 kb on - strand, within RR42_RS02160 at 480.653 kb on + strand, within RR42_RS02160 at 480.653 kb on + strand, within RR42_RS02160 at 480.653 kb on + strand, within RR42_RS02160 at 480.654 kb on - strand, within RR42_RS02160 at 480.654 kb on - strand, within RR42_RS02160 at 480.654 kb on - strand, within RR42_RS02160 at 480.741 kb on - strand, within RR42_RS02160 at 480.770 kb on + strand, within RR42_RS02160 at 480.771 kb on - strand, within RR42_RS02160 at 480.893 kb on + strand, within RR42_RS02160 at 480.893 kb on + strand, within RR42_RS02160 at 480.893 kb on + strand, within RR42_RS02160 at 480.893 kb on + strand, within RR42_RS02160 at 480.894 kb on + strand, within RR42_RS02160 at 480.942 kb on - strand, within RR42_RS02160 at 480.942 kb on - strand, within RR42_RS02160 at 480.942 kb on - strand, within RR42_RS02160 at 480.942 kb on - strand, within RR42_RS02160 at 481.149 kb on + strand at 481.149 kb on + strand at 481.150 kb on - strand at 481.271 kb on + strand at 481.271 kb on + strand at 481.272 kb on - strand at 481.275 kb on + strand at 481.275 kb on + strand at 481.276 kb on - strand at 481.810 kb on - strand, within RR42_RS02165 at 481.810 kb on - strand, within RR42_RS02165 at 481.810 kb on - strand, within RR42_RS02165 at 481.829 kb on - strand, within RR42_RS02165 at 481.914 kb on - strand, within RR42_RS02165 at 482.261 kb on - strand at 482.293 kb on + strand at 482.360 kb on - strand at 482.397 kb on + strand at 482.397 kb on + strand at 482.397 kb on + strand at 482.397 kb on + strand at 482.398 kb on - strand at 482.398 kb on - strand at 482.398 kb on - strand at 482.398 kb on - strand at 482.398 kb on - strand at 482.399 kb on - strand at 482.435 kb on + strand at 482.521 kb on - strand at 482.521 kb on - strand at 482.522 kb on + strand at 482.869 kb on + strand, within RR42_RS02170 at 482.869 kb on + strand, within RR42_RS02170 at 482.872 kb on + strand, within RR42_RS02170 at 482.916 kb on + strand, within RR42_RS02170 at 482.917 kb on - strand, within RR42_RS02170 at 482.925 kb on + strand, within RR42_RS02170 at 482.925 kb on + strand, within RR42_RS02170 at 482.925 kb on + strand, within RR42_RS02170 at 483.033 kb on + strand, within RR42_RS02170 at 483.034 kb on - strand, within RR42_RS02170 at 483.034 kb on - strand, within RR42_RS02170 at 483.041 kb on + strand, within RR42_RS02170 at 483.093 kb on + strand, within RR42_RS02170
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Paraquat dichloride 0.064 mg/ml remove 480,321 + +1.4 480,450 - RR42_RS02160 0.22 -0.2 480,450 - RR42_RS02160 0.22 +2.0 480,460 + RR42_RS02160 0.23 +0.9 480,460 + RR42_RS02160 0.23 +1.5 480,461 - RR42_RS02160 0.23 -0.8 480,461 - RR42_RS02160 0.23 +0.5 480,653 + RR42_RS02160 0.43 -1.7 480,653 + RR42_RS02160 0.43 -1.0 480,653 + RR42_RS02160 0.43 +0.5 480,654 - RR42_RS02160 0.43 -0.6 480,654 - RR42_RS02160 0.43 -0.6 480,654 - RR42_RS02160 0.43 -0.6 480,741 - RR42_RS02160 0.52 +0.2 480,770 + RR42_RS02160 0.55 +0.6 480,771 - RR42_RS02160 0.55 +1.2 480,893 + RR42_RS02160 0.67 +1.2 480,893 + RR42_RS02160 0.67 +0.5 480,893 + RR42_RS02160 0.67 -0.5 480,893 + RR42_RS02160 0.67 +0.5 480,894 + RR42_RS02160 0.67 -2.7 480,942 - RR42_RS02160 0.72 -0.2 480,942 - RR42_RS02160 0.72 +1.0 480,942 - RR42_RS02160 0.72 +0.1 480,942 - RR42_RS02160 0.72 +0.1 481,149 + -1.7 481,149 + -0.2 481,150 - -0.2 481,271 + +1.0 481,271 + +1.2 481,272 - +0.2 481,275 + +2.5 481,275 + -0.5 481,276 - -0.2 481,810 - RR42_RS02165 0.52 +0.7 481,810 - RR42_RS02165 0.52 +0.3 481,810 - RR42_RS02165 0.52 -0.3 481,829 - RR42_RS02165 0.54 +0.9 481,914 - RR42_RS02165 0.63 +0.5 482,261 - +0.2 482,293 + -0.1 482,360 - +0.7 482,397 + -0.6 482,397 + -0.5 482,397 + -0.2 482,397 + +0.0 482,398 - +0.0 482,398 - +2.1 482,398 - -0.9 482,398 - +0.5 482,398 - +0.5 482,399 - +1.5 482,435 + -2.7 482,521 - +1.2 482,521 - +0.5 482,522 + -0.8 482,869 + RR42_RS02170 0.54 +1.0 482,869 + RR42_RS02170 0.54 -0.4 482,872 + RR42_RS02170 0.54 -1.5 482,916 + RR42_RS02170 0.60 -1.5 482,917 - RR42_RS02170 0.60 -0.3 482,925 + RR42_RS02170 0.61 +0.4 482,925 + RR42_RS02170 0.61 -0.8 482,925 + RR42_RS02170 0.61 +0.6 483,033 + RR42_RS02170 0.76 -0.6 483,034 - RR42_RS02170 0.76 +0.8 483,034 - RR42_RS02170 0.76 -2.1 483,041 + RR42_RS02170 0.77 -1.2 483,093 + RR42_RS02170 0.84 +1.0
Or see this region's nucleotide sequence