Experiment: R2A with Paraquat dichloride 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01895 and RR42_RS01900 are separated by 175 nucleotides RR42_RS01900 and RR42_RS01905 are separated by 78 nucleotides RR42_RS01905 and RR42_RS01910 are separated by 109 nucleotides
RR42_RS01895: RR42_RS01895 - MFS transporter, at 426,763 to 427,623
_RS01895
RR42_RS01900: RR42_RS01900 - membrane protein, at 427,799 to 428,008
_RS01900
RR42_RS01905: RR42_RS01905 - cytochrome C oxidase subunit II, at 428,087 to 428,848
_RS01905
RR42_RS01910: RR42_RS01910 - cytochrome C oxidase subunit I, at 428,958 to 429,614
_RS01910
Position (kb) 427
428
429 Strain fitness (log2 ratio) -1
0
1
2 at 426.831 kb on + strand at 426.898 kb on + strand, within RR42_RS01895 at 426.898 kb on + strand, within RR42_RS01895 at 426.898 kb on + strand, within RR42_RS01895 at 426.986 kb on - strand, within RR42_RS01895 at 427.081 kb on + strand, within RR42_RS01895 at 427.082 kb on - strand, within RR42_RS01895 at 427.154 kb on + strand, within RR42_RS01895 at 427.299 kb on + strand, within RR42_RS01895 at 427.366 kb on + strand, within RR42_RS01895 at 427.366 kb on + strand, within RR42_RS01895 at 427.420 kb on + strand, within RR42_RS01895 at 427.421 kb on - strand, within RR42_RS01895 at 427.423 kb on - strand, within RR42_RS01895 at 427.564 kb on + strand at 427.601 kb on - strand at 427.621 kb on + strand at 427.622 kb on - strand at 427.622 kb on - strand at 427.723 kb on + strand at 427.724 kb on - strand at 427.724 kb on - strand at 427.724 kb on - strand at 427.724 kb on - strand at 427.724 kb on - strand at 427.830 kb on - strand, within RR42_RS01900 at 427.830 kb on - strand, within RR42_RS01900 at 427.830 kb on - strand, within RR42_RS01900 at 427.966 kb on + strand, within RR42_RS01900 at 427.966 kb on + strand, within RR42_RS01900 at 428.036 kb on - strand at 428.041 kb on + strand at 428.041 kb on + strand at 428.042 kb on - strand at 428.042 kb on - strand at 428.338 kb on + strand, within RR42_RS01905 at 428.339 kb on - strand, within RR42_RS01905 at 428.498 kb on - strand, within RR42_RS01905 at 428.640 kb on - strand, within RR42_RS01905 at 428.640 kb on - strand, within RR42_RS01905 at 428.753 kb on + strand, within RR42_RS01905 at 428.754 kb on - strand, within RR42_RS01905 at 428.760 kb on - strand, within RR42_RS01905 at 428.957 kb on + strand at 428.957 kb on + strand at 428.957 kb on + strand at 428.957 kb on + strand at 428.958 kb on - strand at 428.958 kb on - strand at 428.958 kb on - strand at 428.958 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Paraquat dichloride 0.064 mg/ml remove 426,831 + +0.7 426,898 + RR42_RS01895 0.16 -0.6 426,898 + RR42_RS01895 0.16 -0.6 426,898 + RR42_RS01895 0.16 -0.8 426,986 - RR42_RS01895 0.26 +0.2 427,081 + RR42_RS01895 0.37 -0.2 427,082 - RR42_RS01895 0.37 +0.5 427,154 + RR42_RS01895 0.45 +1.0 427,299 + RR42_RS01895 0.62 +0.2 427,366 + RR42_RS01895 0.70 -0.9 427,366 + RR42_RS01895 0.70 -1.1 427,420 + RR42_RS01895 0.76 +2.1 427,421 - RR42_RS01895 0.76 +0.2 427,423 - RR42_RS01895 0.77 -0.9 427,564 + +0.3 427,601 - -1.6 427,621 + -1.3 427,622 - +0.6 427,622 - -0.0 427,723 + -0.8 427,724 - -0.1 427,724 - -0.5 427,724 - +1.3 427,724 - -0.2 427,724 - +0.9 427,830 - RR42_RS01900 0.15 -0.2 427,830 - RR42_RS01900 0.15 +1.4 427,830 - RR42_RS01900 0.15 +1.4 427,966 + RR42_RS01900 0.80 +0.4 427,966 + RR42_RS01900 0.80 -0.1 428,036 - -1.1 428,041 + -1.6 428,041 + +1.0 428,042 - +1.6 428,042 - -0.1 428,338 + RR42_RS01905 0.33 +0.4 428,339 - RR42_RS01905 0.33 +0.6 428,498 - RR42_RS01905 0.54 -0.0 428,640 - RR42_RS01905 0.73 -1.1 428,640 - RR42_RS01905 0.73 +1.0 428,753 + RR42_RS01905 0.87 -1.1 428,754 - RR42_RS01905 0.88 +0.8 428,760 - RR42_RS01905 0.88 -0.8 428,957 + +0.4 428,957 + +0.6 428,957 + +0.6 428,957 + +0.4 428,958 - -0.3 428,958 - -0.3 428,958 - +0.8 428,958 - +1.0
Or see this region's nucleotide sequence