Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS01755

Experiment: R2A with Paraquat dichloride 0.064 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS01750 and RR42_RS01755 are separated by 65 nucleotidesRR42_RS01755 and RR42_RS01760 are separated by 31 nucleotides RR42_RS01750: RR42_RS01750 - hypothetical protein, at 399,129 to 399,938 _RS01750 RR42_RS01755: RR42_RS01755 - nitrogen regulatory protein P-II 1, at 400,004 to 400,342 _RS01755 RR42_RS01760: RR42_RS01760 - ammonia channel protein, at 400,374 to 401,909 _RS01760 Position (kb) 400 401Strain fitness (log2 ratio) -2 -1 0 1 2at 399.050 kb on + strandat 399.073 kb on - strandat 399.080 kb on + strandat 399.080 kb on + strandat 399.080 kb on + strandat 399.081 kb on - strandat 399.098 kb on + strandat 399.300 kb on + strand, within RR42_RS01750at 399.301 kb on - strand, within RR42_RS01750at 399.301 kb on - strand, within RR42_RS01750at 399.301 kb on - strand, within RR42_RS01750at 399.301 kb on - strand, within RR42_RS01750at 399.381 kb on + strand, within RR42_RS01750at 399.381 kb on + strand, within RR42_RS01750at 399.381 kb on + strand, within RR42_RS01750at 399.381 kb on + strand, within RR42_RS01750at 399.381 kb on + strand, within RR42_RS01750at 399.382 kb on - strand, within RR42_RS01750at 399.382 kb on - strand, within RR42_RS01750at 399.382 kb on - strand, within RR42_RS01750at 399.407 kb on + strand, within RR42_RS01750at 399.407 kb on + strand, within RR42_RS01750at 399.408 kb on - strand, within RR42_RS01750at 399.408 kb on - strand, within RR42_RS01750at 399.462 kb on + strand, within RR42_RS01750at 399.462 kb on + strand, within RR42_RS01750at 399.462 kb on + strand, within RR42_RS01750at 399.463 kb on - strand, within RR42_RS01750at 399.510 kb on + strand, within RR42_RS01750at 399.511 kb on - strand, within RR42_RS01750at 399.511 kb on - strand, within RR42_RS01750at 399.531 kb on + strand, within RR42_RS01750at 399.532 kb on - strand, within RR42_RS01750at 399.532 kb on - strand, within RR42_RS01750at 399.532 kb on - strand, within RR42_RS01750at 399.532 kb on - strand, within RR42_RS01750at 399.534 kb on + strand, within RR42_RS01750at 399.535 kb on - strand, within RR42_RS01750at 399.535 kb on - strand, within RR42_RS01750at 399.535 kb on - strand, within RR42_RS01750at 399.537 kb on + strand, within RR42_RS01750at 399.550 kb on - strand, within RR42_RS01750at 399.573 kb on + strand, within RR42_RS01750at 399.574 kb on - strand, within RR42_RS01750at 399.574 kb on - strand, within RR42_RS01750at 399.588 kb on + strand, within RR42_RS01750at 399.588 kb on + strand, within RR42_RS01750at 399.588 kb on + strand, within RR42_RS01750at 399.588 kb on + strand, within RR42_RS01750at 399.588 kb on + strand, within RR42_RS01750at 399.588 kb on + strand, within RR42_RS01750at 399.589 kb on - strand, within RR42_RS01750at 399.589 kb on - strand, within RR42_RS01750at 399.625 kb on - strand, within RR42_RS01750at 399.669 kb on + strand, within RR42_RS01750at 399.669 kb on + strand, within RR42_RS01750at 399.669 kb on + strand, within RR42_RS01750at 399.669 kb on + strand, within RR42_RS01750at 399.669 kb on + strand, within RR42_RS01750at 399.675 kb on + strand, within RR42_RS01750at 399.676 kb on - strand, within RR42_RS01750at 399.676 kb on - strand, within RR42_RS01750at 399.676 kb on - strand, within RR42_RS01750at 399.676 kb on - strand, within RR42_RS01750at 399.678 kb on + strand, within RR42_RS01750at 399.678 kb on + strand, within RR42_RS01750at 399.679 kb on - strand, within RR42_RS01750at 399.777 kb on + strand, within RR42_RS01750at 399.778 kb on - strand, within RR42_RS01750at 399.778 kb on - strand, within RR42_RS01750at 399.840 kb on + strand, within RR42_RS01750at 399.840 kb on + strand, within RR42_RS01750at 399.841 kb on - strand, within RR42_RS01750at 399.842 kb on + strand, within RR42_RS01750at 399.843 kb on - strand, within RR42_RS01750at 399.843 kb on - strand, within RR42_RS01750at 399.872 kb on + strandat 399.937 kb on - strandat 400.155 kb on - strand, within RR42_RS01755at 400.155 kb on - strand, within RR42_RS01755at 400.155 kb on - strand, within RR42_RS01755at 400.155 kb on - strand, within RR42_RS01755at 400.616 kb on + strand, within RR42_RS01760at 400.683 kb on + strand, within RR42_RS01760at 400.683 kb on + strand, within RR42_RS01760at 400.773 kb on + strand, within RR42_RS01760at 400.773 kb on + strand, within RR42_RS01760at 400.773 kb on + strand, within RR42_RS01760at 400.774 kb on - strand, within RR42_RS01760at 400.774 kb on - strand, within RR42_RS01760at 400.774 kb on - strand, within RR42_RS01760at 400.779 kb on + strand, within RR42_RS01760at 400.905 kb on + strand, within RR42_RS01760at 400.905 kb on + strand, within RR42_RS01760at 400.905 kb on + strand, within RR42_RS01760at 400.905 kb on + strand, within RR42_RS01760at 400.906 kb on - strand, within RR42_RS01760at 400.906 kb on - strand, within RR42_RS01760at 400.938 kb on - strand, within RR42_RS01760at 401.025 kb on + strand, within RR42_RS01760at 401.026 kb on - strand, within RR42_RS01760at 401.073 kb on + strand, within RR42_RS01760at 401.074 kb on - strand, within RR42_RS01760at 401.074 kb on - strand, within RR42_RS01760

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Paraquat dichloride 0.064 mg/ml
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399,050 + -0.2
399,073 - -0.7
399,080 + +0.1
399,080 + -1.6
399,080 + +0.7
399,081 - -1.1
399,098 + +0.2
399,300 + RR42_RS01750 0.21 +0.0
399,301 - RR42_RS01750 0.21 +1.2
399,301 - RR42_RS01750 0.21 +0.0
399,301 - RR42_RS01750 0.21 +2.3
399,301 - RR42_RS01750 0.21 -0.0
399,381 + RR42_RS01750 0.31 +0.2
399,381 + RR42_RS01750 0.31 -0.6
399,381 + RR42_RS01750 0.31 -0.7
399,381 + RR42_RS01750 0.31 -0.5
399,381 + RR42_RS01750 0.31 -1.1
399,382 - RR42_RS01750 0.31 -0.3
399,382 - RR42_RS01750 0.31 -0.7
399,382 - RR42_RS01750 0.31 +0.2
399,407 + RR42_RS01750 0.34 +1.3
399,407 + RR42_RS01750 0.34 -0.3
399,408 - RR42_RS01750 0.34 +0.6
399,408 - RR42_RS01750 0.34 -0.1
399,462 + RR42_RS01750 0.41 +0.8
399,462 + RR42_RS01750 0.41 -0.9
399,462 + RR42_RS01750 0.41 -0.0
399,463 - RR42_RS01750 0.41 +0.2
399,510 + RR42_RS01750 0.47 -1.3
399,511 - RR42_RS01750 0.47 +0.1
399,511 - RR42_RS01750 0.47 -0.6
399,531 + RR42_RS01750 0.50 -0.9
399,532 - RR42_RS01750 0.50 -0.1
399,532 - RR42_RS01750 0.50 +1.3
399,532 - RR42_RS01750 0.50 -0.3
399,532 - RR42_RS01750 0.50 -0.8
399,534 + RR42_RS01750 0.50 +0.3
399,535 - RR42_RS01750 0.50 -1.1
399,535 - RR42_RS01750 0.50 -0.0
399,535 - RR42_RS01750 0.50 -0.5
399,537 + RR42_RS01750 0.50 -0.3
399,550 - RR42_RS01750 0.52 -0.2
399,573 + RR42_RS01750 0.55 -1.2
399,574 - RR42_RS01750 0.55 +0.2
399,574 - RR42_RS01750 0.55 -0.4
399,588 + RR42_RS01750 0.57 +0.1
399,588 + RR42_RS01750 0.57 +0.2
399,588 + RR42_RS01750 0.57 -1.5
399,588 + RR42_RS01750 0.57 -0.2
399,588 + RR42_RS01750 0.57 -0.1
399,588 + RR42_RS01750 0.57 +1.5
399,589 - RR42_RS01750 0.57 -0.1
399,589 - RR42_RS01750 0.57 +0.9
399,625 - RR42_RS01750 0.61 -1.1
399,669 + RR42_RS01750 0.67 -0.1
399,669 + RR42_RS01750 0.67 +1.0
399,669 + RR42_RS01750 0.67 -2.1
399,669 + RR42_RS01750 0.67 +0.7
399,669 + RR42_RS01750 0.67 -1.4
399,675 + RR42_RS01750 0.67 +0.2
399,676 - RR42_RS01750 0.68 -1.0
399,676 - RR42_RS01750 0.68 -0.1
399,676 - RR42_RS01750 0.68 -0.2
399,676 - RR42_RS01750 0.68 -1.0
399,678 + RR42_RS01750 0.68 -0.8
399,678 + RR42_RS01750 0.68 +0.4
399,679 - RR42_RS01750 0.68 -1.3
399,777 + RR42_RS01750 0.80 -0.9
399,778 - RR42_RS01750 0.80 +0.2
399,778 - RR42_RS01750 0.80 -0.9
399,840 + RR42_RS01750 0.88 +1.2
399,840 + RR42_RS01750 0.88 +1.9
399,841 - RR42_RS01750 0.88 +2.6
399,842 + RR42_RS01750 0.88 -0.2
399,843 - RR42_RS01750 0.88 -1.2
399,843 - RR42_RS01750 0.88 -0.5
399,872 + -0.2
399,937 - -0.2
400,155 - RR42_RS01755 0.45 +0.2
400,155 - RR42_RS01755 0.45 +0.6
400,155 - RR42_RS01755 0.45 +2.6
400,155 - RR42_RS01755 0.45 -0.0
400,616 + RR42_RS01760 0.16 +0.2
400,683 + RR42_RS01760 0.20 +1.4
400,683 + RR42_RS01760 0.20 +1.0
400,773 + RR42_RS01760 0.26 +1.0
400,773 + RR42_RS01760 0.26 +0.8
400,773 + RR42_RS01760 0.26 -2.0
400,774 - RR42_RS01760 0.26 +1.0
400,774 - RR42_RS01760 0.26 -1.2
400,774 - RR42_RS01760 0.26 -0.7
400,779 + RR42_RS01760 0.26 +0.0
400,905 + RR42_RS01760 0.35 -0.2
400,905 + RR42_RS01760 0.35 -0.3
400,905 + RR42_RS01760 0.35 +0.6
400,905 + RR42_RS01760 0.35 -2.1
400,906 - RR42_RS01760 0.35 +0.4
400,906 - RR42_RS01760 0.35 +0.3
400,938 - RR42_RS01760 0.37 -0.3
401,025 + RR42_RS01760 0.42 +0.8
401,026 - RR42_RS01760 0.42 +1.6
401,073 + RR42_RS01760 0.46 -0.2
401,074 - RR42_RS01760 0.46 -0.1
401,074 - RR42_RS01760 0.46 -1.8

Or see this region's nucleotide sequence